Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SHANK3Q9BYB0 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
SHANK3Q9BYB0 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC21.72■■□□□ 1.07
SHANK3Q9BYB0 MIR1909-201ENST00000411312 80 ntBASIC21.72■■□□□ 1.07
SHANK3Q9BYB0 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC21.72■■□□□ 1.07
SHANK3Q9BYB0 ACA64.2-201ENST00000459014 129 ntBASIC21.72■■□□□ 1.07
SHANK3Q9BYB0 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC21.72■■□□□ 1.07
SHANK3Q9BYB0 SSH2-210ENST00000582084 560 ntTSL 3 BASIC21.72■■□□□ 1.07
SHANK3Q9BYB0 RN7SL828P-201ENST00000607615 303 ntBASIC21.72■■□□□ 1.07
SHANK3Q9BYB0 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC21.72■■□□□ 1.07
SHANK3Q9BYB0 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SHANK3Q9BYB0 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC21.72■■□□□ 1.07
SHANK3Q9BYB0 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC21.72■■□□□ 1.07
SHANK3Q9BYB0 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SHANK3Q9BYB0 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC21.72■■□□□ 1.07
SHANK3Q9BYB0 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
SHANK3Q9BYB0 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SHANK3Q9BYB0 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SHANK3Q9BYB0 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
SHANK3Q9BYB0 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC21.72■■□□□ 1.07
SHANK3Q9BYB0 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
SHANK3Q9BYB0 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
SHANK3Q9BYB0 RASL12-203ENST00000434605 982 ntTSL 2 BASIC21.72■■□□□ 1.07
SHANK3Q9BYB0 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC21.72■■□□□ 1.07
SHANK3Q9BYB0 AL079307.3-201ENST00000556114 283 ntBASIC21.72■■□□□ 1.07
SHANK3Q9BYB0 AC007431.3-201ENST00000623221 587 ntBASIC21.72■■□□□ 1.07
SHANK3Q9BYB0 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
SHANK3Q9BYB0 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
SHANK3Q9BYB0 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
SHANK3Q9BYB0 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
SHANK3Q9BYB0 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SHANK3Q9BYB0 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
SHANK3Q9BYB0 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SHANK3Q9BYB0 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SHANK3Q9BYB0 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
SHANK3Q9BYB0 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
SHANK3Q9BYB0 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
SHANK3Q9BYB0 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC21.71■■□□□ 1.07
SHANK3Q9BYB0 DGCR5-201ENST00000399539 862 ntBASIC21.71■■□□□ 1.07
SHANK3Q9BYB0 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SHANK3Q9BYB0 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
SHANK3Q9BYB0 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC21.71■■□□□ 1.07
SHANK3Q9BYB0 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC21.71■■□□□ 1.07
SHANK3Q9BYB0 AC132938.2-201ENST00000579188 680 ntBASIC21.71■■□□□ 1.07
SHANK3Q9BYB0 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC21.71■■□□□ 1.07
SHANK3Q9BYB0 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC21.71■■□□□ 1.07
SHANK3Q9BYB0 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC21.71■■□□□ 1.07
SHANK3Q9BYB0 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
SHANK3Q9BYB0 AL591163.1-201ENST00000641757 987 ntBASIC21.71■■□□□ 1.07
SHANK3Q9BYB0 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SHANK3Q9BYB0 AL035456.1-201ENST00000456064 1369 ntBASIC21.71■■□□□ 1.07
SHANK3Q9BYB0 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SHANK3Q9BYB0 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
SHANK3Q9BYB0 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC21.71■■□□□ 1.07
SHANK3Q9BYB0 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
SHANK3Q9BYB0 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC21.7■■□□□ 1.07
SHANK3Q9BYB0 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC21.7■■□□□ 1.07
SHANK3Q9BYB0 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.07
SHANK3Q9BYB0 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SHANK3Q9BYB0 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
SHANK3Q9BYB0 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
SHANK3Q9BYB0 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
SHANK3Q9BYB0 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SHANK3Q9BYB0 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC21.7■■□□□ 1.06
SHANK3Q9BYB0 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC21.7■■□□□ 1.06
SHANK3Q9BYB0 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
SHANK3Q9BYB0 TMEM14DP-201ENST00000422205 345 ntBASIC21.7■■□□□ 1.06
SHANK3Q9BYB0 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC21.7■■□□□ 1.06
SHANK3Q9BYB0 AC119751.2-201ENST00000504529 210 ntBASIC21.7■■□□□ 1.06
SHANK3Q9BYB0 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC21.7■■□□□ 1.06
SHANK3Q9BYB0 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
SHANK3Q9BYB0 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC21.7■■□□□ 1.06
SHANK3Q9BYB0 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SHANK3Q9BYB0 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
SHANK3Q9BYB0 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
SHANK3Q9BYB0 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC21.7■■□□□ 1.06
SHANK3Q9BYB0 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SHANK3Q9BYB0 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
SHANK3Q9BYB0 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SHANK3Q9BYB0 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC21.7■■□□□ 1.06
SHANK3Q9BYB0 COMP-202ENST00000425807 2292 ntTSL 2 BASIC21.7■■□□□ 1.06
SHANK3Q9BYB0 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
SHANK3Q9BYB0 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
SHANK3Q9BYB0 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC21.7■■□□□ 1.06
SHANK3Q9BYB0 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
SHANK3Q9BYB0 CD276-201ENST00000318424 2738 ntTSL 5 BASIC21.69■■□□□ 1.06
SHANK3Q9BYB0 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC21.69■■□□□ 1.06
SHANK3Q9BYB0 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
SHANK3Q9BYB0 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC21.69■■□□□ 1.06
SHANK3Q9BYB0 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC21.69■■□□□ 1.06
SHANK3Q9BYB0 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC21.69■■□□□ 1.06
SHANK3Q9BYB0 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SHANK3Q9BYB0 SLC7A15P-201ENST00000424028 1363 ntBASIC21.69■■□□□ 1.06
SHANK3Q9BYB0 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SHANK3Q9BYB0 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
SHANK3Q9BYB0 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SHANK3Q9BYB0 RBM39-205ENST00000397370 612 ntTSL 2 BASIC21.69■■□□□ 1.06
SHANK3Q9BYB0 AC004945.1-201ENST00000416738 983 ntBASIC21.69■■□□□ 1.06
SHANK3Q9BYB0 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC21.69■■□□□ 1.06
SHANK3Q9BYB0 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 52 ms