Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PTCHD1Q96NR3 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PTCHD1Q96NR3 CROCCP1-201ENST00000426910 5675 ntBASIC16.09■□□□□ 0.17
PTCHD1Q96NR3 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
PTCHD1Q96NR3 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PTCHD1Q96NR3 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC16.09■□□□□ 0.17
PTCHD1Q96NR3 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PTCHD1Q96NR3 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC16.09■□□□□ 0.17
PTCHD1Q96NR3 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC16.08■□□□□ 0.17
PTCHD1Q96NR3 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
PTCHD1Q96NR3 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC16.08■□□□□ 0.17
PTCHD1Q96NR3 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.17
PTCHD1Q96NR3 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.17
PTCHD1Q96NR3 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC16.08■□□□□ 0.17
PTCHD1Q96NR3 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
PTCHD1Q96NR3 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC16.08■□□□□ 0.17
PTCHD1Q96NR3 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.17
PTCHD1Q96NR3 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
PTCHD1Q96NR3 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.17
PTCHD1Q96NR3 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.17
PTCHD1Q96NR3 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PTCHD1Q96NR3 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
PTCHD1Q96NR3 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PTCHD1Q96NR3 MIR574-201ENST00000385209 96 ntBASIC16.08■□□□□ 0.16
PTCHD1Q96NR3 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC16.08■□□□□ 0.16
PTCHD1Q96NR3 MRPL20P1-201ENST00000400819 433 ntBASIC16.08■□□□□ 0.16
PTCHD1Q96NR3 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC16.08■□□□□ 0.16
PTCHD1Q96NR3 CRYGEP-201ENST00000412192 528 ntBASIC16.08■□□□□ 0.16
PTCHD1Q96NR3 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC16.08■□□□□ 0.16
PTCHD1Q96NR3 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PTCHD1Q96NR3 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
PTCHD1Q96NR3 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PTCHD1Q96NR3 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PTCHD1Q96NR3 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PTCHD1Q96NR3 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
PTCHD1Q96NR3 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC16.08■□□□□ 0.16
PTCHD1Q96NR3 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
PTCHD1Q96NR3 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
PTCHD1Q96NR3 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
PTCHD1Q96NR3 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
PTCHD1Q96NR3 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC16.08■□□□□ 0.16
PTCHD1Q96NR3 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PTCHD1Q96NR3 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
PTCHD1Q96NR3 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PTCHD1Q96NR3 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
PTCHD1Q96NR3 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PTCHD1Q96NR3 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PTCHD1Q96NR3 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PTCHD1Q96NR3 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PTCHD1Q96NR3 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
PTCHD1Q96NR3 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PTCHD1Q96NR3 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PTCHD1Q96NR3 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PTCHD1Q96NR3 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PTCHD1Q96NR3 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PTCHD1Q96NR3 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PTCHD1Q96NR3 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
PTCHD1Q96NR3 SLC25A1P3-201ENST00000395415 828 ntBASIC16.07■□□□□ 0.16
PTCHD1Q96NR3 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC16.07■□□□□ 0.16
PTCHD1Q96NR3 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC16.07■□□□□ 0.16
PTCHD1Q96NR3 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC16.07■□□□□ 0.16
PTCHD1Q96NR3 KRT18P58-201ENST00000527480 1120 ntBASIC16.07■□□□□ 0.16
PTCHD1Q96NR3 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC16.07■□□□□ 0.16
PTCHD1Q96NR3 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
PTCHD1Q96NR3 AC027601.4-201ENST00000611259 610 ntBASIC16.07■□□□□ 0.16
PTCHD1Q96NR3 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PTCHD1Q96NR3 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
PTCHD1Q96NR3 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PTCHD1Q96NR3 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PTCHD1Q96NR3 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
PTCHD1Q96NR3 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PTCHD1Q96NR3 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC16.07■□□□□ 0.16
PTCHD1Q96NR3 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
PTCHD1Q96NR3 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
PTCHD1Q96NR3 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PTCHD1Q96NR3 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC16.07■□□□□ 0.16
PTCHD1Q96NR3 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC16.07■□□□□ 0.16
PTCHD1Q96NR3 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
PTCHD1Q96NR3 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PTCHD1Q96NR3 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
PTCHD1Q96NR3 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PTCHD1Q96NR3 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
PTCHD1Q96NR3 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
PTCHD1Q96NR3 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC16.06■□□□□ 0.16
PTCHD1Q96NR3 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC16.06■□□□□ 0.16
PTCHD1Q96NR3 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
PTCHD1Q96NR3 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC16.06■□□□□ 0.16
PTCHD1Q96NR3 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
PTCHD1Q96NR3 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PTCHD1Q96NR3 PCDHA12-202ENST00000613593 2588 ntBASIC16.06■□□□□ 0.16
PTCHD1Q96NR3 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC16.06■□□□□ 0.16
PTCHD1Q96NR3 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PTCHD1Q96NR3 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PTCHD1Q96NR3 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
PTCHD1Q96NR3 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
PTCHD1Q96NR3 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
PTCHD1Q96NR3 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC16.06■□□□□ 0.16
PTCHD1Q96NR3 HNRNPRP1-201ENST00000453465 1695 ntBASIC16.06■□□□□ 0.16
PTCHD1Q96NR3 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC16.06■□□□□ 0.16
PTCHD1Q96NR3 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms