Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 AC026396.1-201ENST00000419388 421 ntBASIC16.4■□□□□ 0.22
VMP1Q96GC9 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC16.4■□□□□ 0.22
VMP1Q96GC9 AL160237.2-201ENST00000556165 472 ntBASIC16.4■□□□□ 0.22
VMP1Q96GC9 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC16.4■□□□□ 0.22
VMP1Q96GC9 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC16.4■□□□□ 0.22
VMP1Q96GC9 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VMP1Q96GC9 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VMP1Q96GC9 PC-208ENST00000529047 1607 ntTSL 3 BASIC16.4■□□□□ 0.22
VMP1Q96GC9 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC16.4■□□□□ 0.22
VMP1Q96GC9 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC16.4■□□□□ 0.22
VMP1Q96GC9 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
VMP1Q96GC9 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VMP1Q96GC9 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC16.4■□□□□ 0.22
VMP1Q96GC9 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC16.4■□□□□ 0.22
VMP1Q96GC9 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.22
VMP1Q96GC9 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.22
VMP1Q96GC9 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VMP1Q96GC9 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC16.39■□□□□ 0.21
VMP1Q96GC9 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VMP1Q96GC9 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VMP1Q96GC9 AC103702.1-201ENST00000548801 2630 ntBASIC16.39■□□□□ 0.21
VMP1Q96GC9 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
VMP1Q96GC9 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
VMP1Q96GC9 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC16.39■□□□□ 0.21
VMP1Q96GC9 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC16.39■□□□□ 0.21
VMP1Q96GC9 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC16.39■□□□□ 0.21
VMP1Q96GC9 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC16.39■□□□□ 0.21
VMP1Q96GC9 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VMP1Q96GC9 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC16.39■□□□□ 0.21
VMP1Q96GC9 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VMP1Q96GC9 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
VMP1Q96GC9 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
VMP1Q96GC9 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VMP1Q96GC9 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC16.39■□□□□ 0.21
VMP1Q96GC9 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VMP1Q96GC9 SCARNA2-201ENST00000458748 420 ntBASIC16.39■□□□□ 0.21
VMP1Q96GC9 AC104692.2-201ENST00000603054 253 ntBASIC16.39■□□□□ 0.21
VMP1Q96GC9 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC16.39■□□□□ 0.21
VMP1Q96GC9 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VMP1Q96GC9 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
VMP1Q96GC9 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
VMP1Q96GC9 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VMP1Q96GC9 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
VMP1Q96GC9 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC16.39■□□□□ 0.21
VMP1Q96GC9 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
VMP1Q96GC9 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
VMP1Q96GC9 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
VMP1Q96GC9 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC16.39■□□□□ 0.21
VMP1Q96GC9 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
VMP1Q96GC9 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
VMP1Q96GC9 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC16.39■□□□□ 0.21
VMP1Q96GC9 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
VMP1Q96GC9 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
VMP1Q96GC9 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
VMP1Q96GC9 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
VMP1Q96GC9 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
VMP1Q96GC9 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VMP1Q96GC9 PAN3-AS1-201ENST00000563843 1351 ntBASIC16.38■□□□□ 0.21
VMP1Q96GC9 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC16.38■□□□□ 0.21
VMP1Q96GC9 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VMP1Q96GC9 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC16.38■□□□□ 0.21
VMP1Q96GC9 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
VMP1Q96GC9 ABR-203ENST00000536794 2213 ntTSL 2 BASIC16.38■□□□□ 0.21
VMP1Q96GC9 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC16.38■□□□□ 0.21
VMP1Q96GC9 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
VMP1Q96GC9 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VMP1Q96GC9 PCDHA1-201ENST00000378133 2726 ntBASIC16.38■□□□□ 0.21
VMP1Q96GC9 ANKRD26P3-201ENST00000454044 2748 ntBASIC16.38■□□□□ 0.21
VMP1Q96GC9 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VMP1Q96GC9 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC16.38■□□□□ 0.21
VMP1Q96GC9 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC16.38■□□□□ 0.21
VMP1Q96GC9 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VMP1Q96GC9 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VMP1Q96GC9 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VMP1Q96GC9 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VMP1Q96GC9 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
VMP1Q96GC9 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VMP1Q96GC9 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC16.38■□□□□ 0.21
VMP1Q96GC9 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC16.38■□□□□ 0.21
VMP1Q96GC9 FGFR3P6-201ENST00000457012 610 ntBASIC16.38■□□□□ 0.21
VMP1Q96GC9 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
VMP1Q96GC9 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC16.38■□□□□ 0.21
VMP1Q96GC9 CALM3-211ENST00000598871 561 ntTSL 4 BASIC16.38■□□□□ 0.21
VMP1Q96GC9 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
VMP1Q96GC9 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
VMP1Q96GC9 AD001527.2-201ENST00000622994 785 ntBASIC16.38■□□□□ 0.21
VMP1Q96GC9 VPS51-217ENST00000639871 243 ntTSL 5 BASIC16.38■□□□□ 0.21
VMP1Q96GC9 AP000867.4-201ENST00000641616 219 ntBASIC16.38■□□□□ 0.21
VMP1Q96GC9 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VMP1Q96GC9 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VMP1Q96GC9 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VMP1Q96GC9 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
VMP1Q96GC9 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC16.38■□□□□ 0.21
VMP1Q96GC9 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VMP1Q96GC9 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC16.38■□□□□ 0.21
VMP1Q96GC9 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
VMP1Q96GC9 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC16.38■□□□□ 0.21
VMP1Q96GC9 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
VMP1Q96GC9 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VMP1Q96GC9 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms