Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC22.17■■□□□ 1.14
RTF1Q92541 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
RTF1Q92541 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC22.17■■□□□ 1.14
RTF1Q92541 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
RTF1Q92541 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
RTF1Q92541 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC22.16■■□□□ 1.14
RTF1Q92541 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC22.16■■□□□ 1.14
RTF1Q92541 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
RTF1Q92541 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
RTF1Q92541 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
RTF1Q92541 HMGA1P7-201ENST00000406908 502 ntBASIC22.16■■□□□ 1.14
RTF1Q92541 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC22.16■■□□□ 1.14
RTF1Q92541 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC22.16■■□□□ 1.14
RTF1Q92541 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC22.16■■□□□ 1.14
RTF1Q92541 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC22.16■■□□□ 1.14
RTF1Q92541 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC22.16■■□□□ 1.14
RTF1Q92541 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC22.16■■□□□ 1.14
RTF1Q92541 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC22.16■■□□□ 1.14
RTF1Q92541 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
RTF1Q92541 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
RTF1Q92541 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC22.16■■□□□ 1.14
RTF1Q92541 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC22.16■■□□□ 1.14
RTF1Q92541 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
RTF1Q92541 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
RTF1Q92541 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
RTF1Q92541 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC22.15■■□□□ 1.14
RTF1Q92541 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC22.15■■□□□ 1.14
RTF1Q92541 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
RTF1Q92541 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC22.15■■□□□ 1.14
RTF1Q92541 AL021920.2-201ENST00000624828 1351 ntBASIC22.15■■□□□ 1.14
RTF1Q92541 LINC02012-201ENST00000608206 1725 ntBASIC22.15■■□□□ 1.14
RTF1Q92541 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
RTF1Q92541 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC22.15■■□□□ 1.14
RTF1Q92541 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC22.15■■□□□ 1.14
RTF1Q92541 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC22.15■■□□□ 1.14
RTF1Q92541 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC22.15■■□□□ 1.14
RTF1Q92541 GGCT-205ENST00000409436 954 ntTSL 3 BASIC22.15■■□□□ 1.14
RTF1Q92541 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
RTF1Q92541 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC22.15■■□□□ 1.14
RTF1Q92541 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
RTF1Q92541 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC22.15■■□□□ 1.14
RTF1Q92541 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
RTF1Q92541 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC22.15■■□□□ 1.14
RTF1Q92541 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC22.15■■□□□ 1.14
RTF1Q92541 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
RTF1Q92541 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
RTF1Q92541 STX3-203ENST00000529177 1571 ntTSL 2 BASIC22.15■■□□□ 1.14
RTF1Q92541 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
RTF1Q92541 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
RTF1Q92541 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC22.15■■□□□ 1.14
RTF1Q92541 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
RTF1Q92541 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC22.14■■□□□ 1.14
RTF1Q92541 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC22.14■■□□□ 1.14
RTF1Q92541 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
RTF1Q92541 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC22.14■■□□□ 1.14
RTF1Q92541 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC22.14■■□□□ 1.14
RTF1Q92541 PP12613-201ENST00000424958 2230 ntBASIC22.14■■□□□ 1.14
RTF1Q92541 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC22.14■■□□□ 1.14
RTF1Q92541 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC22.14■■□□□ 1.13
RTF1Q92541 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
RTF1Q92541 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC22.14■■□□□ 1.13
RTF1Q92541 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
RTF1Q92541 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
RTF1Q92541 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC22.14■■□□□ 1.13
RTF1Q92541 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC22.14■■□□□ 1.13
RTF1Q92541 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC22.14■■□□□ 1.13
RTF1Q92541 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC22.14■■□□□ 1.13
RTF1Q92541 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC22.14■■□□□ 1.13
RTF1Q92541 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC22.14■■□□□ 1.13
RTF1Q92541 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
RTF1Q92541 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC22.14■■□□□ 1.13
RTF1Q92541 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
RTF1Q92541 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
RTF1Q92541 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC22.14■■□□□ 1.13
RTF1Q92541 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.13
RTF1Q92541 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC22.14■■□□□ 1.13
RTF1Q92541 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC22.14■■□□□ 1.13
RTF1Q92541 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC22.14■■□□□ 1.13
RTF1Q92541 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
RTF1Q92541 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC22.13■■□□□ 1.13
RTF1Q92541 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC22.13■■□□□ 1.13
RTF1Q92541 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC22.13■■□□□ 1.13
RTF1Q92541 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC22.13■■□□□ 1.13
RTF1Q92541 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
RTF1Q92541 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC22.13■■□□□ 1.13
RTF1Q92541 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC22.13■■□□□ 1.13
RTF1Q92541 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC22.13■■□□□ 1.13
RTF1Q92541 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC22.13■■□□□ 1.13
RTF1Q92541 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
RTF1Q92541 LBH-203ENST00000404397 543 ntTSL 4 BASIC22.13■■□□□ 1.13
RTF1Q92541 HCG4-201ENST00000418983 998 ntBASIC22.13■■□□□ 1.13
RTF1Q92541 PMS2P2-201ENST00000425039 1128 ntBASIC22.13■■□□□ 1.13
RTF1Q92541 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC22.13■■□□□ 1.13
RTF1Q92541 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC22.13■■□□□ 1.13
RTF1Q92541 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC22.13■■□□□ 1.13
RTF1Q92541 AP000344.2-201ENST00000512987 629 ntBASIC22.13■■□□□ 1.13
RTF1Q92541 THTPA-204ENST00000554970 569 ntTSL 4 BASIC22.13■■□□□ 1.13
RTF1Q92541 THTPA-206ENST00000556015 535 ntTSL 3 BASIC22.13■■□□□ 1.13
RTF1Q92541 DUX4L17-201ENST00000557360 1267 ntBASIC22.13■■□□□ 1.13
RTF1Q92541 AC091167.2-201ENST00000579581 588 ntBASIC22.13■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 55.2 ms