Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HMGB4Q8WW32 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC17.05■□□□□ 0.32
HMGB4Q8WW32 AC018470.1-201ENST00000624790 3129 ntBASIC17.05■□□□□ 0.32
HMGB4Q8WW32 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
HMGB4Q8WW32 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
HMGB4Q8WW32 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HMGB4Q8WW32 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC17.05■□□□□ 0.32
HMGB4Q8WW32 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGB4Q8WW32 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGB4Q8WW32 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC17.04■□□□□ 0.32
HMGB4Q8WW32 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
HMGB4Q8WW32 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGB4Q8WW32 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HMGB4Q8WW32 BICD1-207ENST00000551848 1962 ntBASIC17.04■□□□□ 0.32
HMGB4Q8WW32 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
HMGB4Q8WW32 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HMGB4Q8WW32 MIR943-201ENST00000401286 94 ntBASIC17.04■□□□□ 0.32
HMGB4Q8WW32 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC17.04■□□□□ 0.32
HMGB4Q8WW32 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGB4Q8WW32 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGB4Q8WW32 KLF2P3-201ENST00000451977 1087 ntBASIC17.04■□□□□ 0.32
HMGB4Q8WW32 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGB4Q8WW32 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC17.04■□□□□ 0.32
HMGB4Q8WW32 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC17.04■□□□□ 0.32
HMGB4Q8WW32 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC17.04■□□□□ 0.32
HMGB4Q8WW32 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC17.04■□□□□ 0.32
HMGB4Q8WW32 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC17.04■□□□□ 0.32
HMGB4Q8WW32 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC17.04■□□□□ 0.32
HMGB4Q8WW32 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGB4Q8WW32 AL009183.1-201ENST00000603760 355 ntBASIC17.04■□□□□ 0.32
HMGB4Q8WW32 AP001059.3-201ENST00000619053 235 ntBASIC17.04■□□□□ 0.32
HMGB4Q8WW32 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC17.04■□□□□ 0.32
HMGB4Q8WW32 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC17.04■□□□□ 0.32
HMGB4Q8WW32 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGB4Q8WW32 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC17.04■□□□□ 0.32
HMGB4Q8WW32 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGB4Q8WW32 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGB4Q8WW32 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGB4Q8WW32 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGB4Q8WW32 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC17.04■□□□□ 0.32
HMGB4Q8WW32 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC17.03■□□□□ 0.32
HMGB4Q8WW32 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
HMGB4Q8WW32 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC17.03■□□□□ 0.32
HMGB4Q8WW32 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC17.03■□□□□ 0.32
HMGB4Q8WW32 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC17.03■□□□□ 0.32
HMGB4Q8WW32 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC17.03■□□□□ 0.32
HMGB4Q8WW32 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HMGB4Q8WW32 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
HMGB4Q8WW32 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HMGB4Q8WW32 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
HMGB4Q8WW32 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
HMGB4Q8WW32 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
HMGB4Q8WW32 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HMGB4Q8WW32 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HMGB4Q8WW32 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
HMGB4Q8WW32 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HMGB4Q8WW32 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HMGB4Q8WW32 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HMGB4Q8WW32 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
HMGB4Q8WW32 CENPM-205ENST00000404067 905 ntTSL 3 BASIC17.03■□□□□ 0.32
HMGB4Q8WW32 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HMGB4Q8WW32 BASP1P1-201ENST00000430708 665 ntBASIC17.03■□□□□ 0.32
HMGB4Q8WW32 GPS2P2-201ENST00000430745 888 ntBASIC17.03■□□□□ 0.32
HMGB4Q8WW32 AC055876.3-201ENST00000431496 288 ntBASIC17.03■□□□□ 0.32
HMGB4Q8WW32 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC17.03■□□□□ 0.32
HMGB4Q8WW32 AC125807.1-201ENST00000483097 614 ntBASIC17.03■□□□□ 0.32
HMGB4Q8WW32 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
HMGB4Q8WW32 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC17.03■□□□□ 0.32
HMGB4Q8WW32 AC051619.7-201ENST00000568314 623 ntBASIC17.03■□□□□ 0.32
HMGB4Q8WW32 AC138649.4-201ENST00000612222 287 ntBASIC17.03■□□□□ 0.32
HMGB4Q8WW32 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC17.03■□□□□ 0.32
HMGB4Q8WW32 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC17.03■□□□□ 0.32
HMGB4Q8WW32 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HMGB4Q8WW32 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HMGB4Q8WW32 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC17.03■□□□□ 0.32
HMGB4Q8WW32 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
HMGB4Q8WW32 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
HMGB4Q8WW32 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC17.03■□□□□ 0.32
HMGB4Q8WW32 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC17.03■□□□□ 0.32
HMGB4Q8WW32 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HMGB4Q8WW32 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
HMGB4Q8WW32 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HMGB4Q8WW32 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HMGB4Q8WW32 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC17.03■□□□□ 0.32
HMGB4Q8WW32 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC17.03■□□□□ 0.32
HMGB4Q8WW32 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HMGB4Q8WW32 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HMGB4Q8WW32 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HMGB4Q8WW32 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
HMGB4Q8WW32 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HMGB4Q8WW32 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
HMGB4Q8WW32 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HMGB4Q8WW32 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC17.02■□□□□ 0.32
HMGB4Q8WW32 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
HMGB4Q8WW32 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
HMGB4Q8WW32 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC17.02■□□□□ 0.32
HMGB4Q8WW32 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC17.02■□□□□ 0.32
HMGB4Q8WW32 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
HMGB4Q8WW32 AC107890.1-201ENST00000422478 521 ntBASIC17.02■□□□□ 0.32
HMGB4Q8WW32 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC17.02■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 50 ms