Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
LMX1AQ8TE12 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
LMX1AQ8TE12 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
LMX1AQ8TE12 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC16.55■□□□□ 0.24
LMX1AQ8TE12 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC16.55■□□□□ 0.24
LMX1AQ8TE12 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC16.55■□□□□ 0.24
LMX1AQ8TE12 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC16.55■□□□□ 0.24
LMX1AQ8TE12 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
LMX1AQ8TE12 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC16.55■□□□□ 0.24
LMX1AQ8TE12 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC16.55■□□□□ 0.24
LMX1AQ8TE12 DUX4L17-201ENST00000557360 1267 ntBASIC16.55■□□□□ 0.24
LMX1AQ8TE12 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
LMX1AQ8TE12 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
LMX1AQ8TE12 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
LMX1AQ8TE12 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC16.55■□□□□ 0.24
LMX1AQ8TE12 AC093525.9-201ENST00000624961 1746 ntBASIC16.55■□□□□ 0.24
LMX1AQ8TE12 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
LMX1AQ8TE12 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
LMX1AQ8TE12 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
LMX1AQ8TE12 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC16.55■□□□□ 0.24
LMX1AQ8TE12 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
LMX1AQ8TE12 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
LMX1AQ8TE12 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
LMX1AQ8TE12 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC16.55■□□□□ 0.24
LMX1AQ8TE12 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
LMX1AQ8TE12 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
LMX1AQ8TE12 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
LMX1AQ8TE12 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
LMX1AQ8TE12 AC016396.2-201ENST00000562575 1417 ntBASIC16.54■□□□□ 0.24
LMX1AQ8TE12 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC16.54■□□□□ 0.24
LMX1AQ8TE12 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
LMX1AQ8TE12 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
LMX1AQ8TE12 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
LMX1AQ8TE12 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
LMX1AQ8TE12 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC16.54■□□□□ 0.24
LMX1AQ8TE12 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
LMX1AQ8TE12 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
LMX1AQ8TE12 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC16.54■□□□□ 0.24
LMX1AQ8TE12 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
LMX1AQ8TE12 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC16.54■□□□□ 0.24
LMX1AQ8TE12 FAM86GP-201ENST00000448322 971 ntBASIC16.54■□□□□ 0.24
LMX1AQ8TE12 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC16.54■□□□□ 0.24
LMX1AQ8TE12 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC16.54■□□□□ 0.24
LMX1AQ8TE12 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
LMX1AQ8TE12 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
LMX1AQ8TE12 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
LMX1AQ8TE12 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC16.54■□□□□ 0.24
LMX1AQ8TE12 AL009183.1-201ENST00000603760 355 ntBASIC16.54■□□□□ 0.24
LMX1AQ8TE12 AC009093.7-201ENST00000623853 1223 ntBASIC16.54■□□□□ 0.24
LMX1AQ8TE12 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
LMX1AQ8TE12 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
LMX1AQ8TE12 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC16.54■□□□□ 0.24
LMX1AQ8TE12 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
LMX1AQ8TE12 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC16.54■□□□□ 0.24
LMX1AQ8TE12 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
LMX1AQ8TE12 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
LMX1AQ8TE12 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
LMX1AQ8TE12 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
LMX1AQ8TE12 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
LMX1AQ8TE12 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC16.53■□□□□ 0.24
LMX1AQ8TE12 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
LMX1AQ8TE12 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
LMX1AQ8TE12 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
LMX1AQ8TE12 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
LMX1AQ8TE12 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
LMX1AQ8TE12 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
LMX1AQ8TE12 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
LMX1AQ8TE12 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC16.53■□□□□ 0.24
LMX1AQ8TE12 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
LMX1AQ8TE12 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
LMX1AQ8TE12 HLA-DRB6-201ENST00000411500 1235 ntBASIC16.53■□□□□ 0.24
LMX1AQ8TE12 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC16.53■□□□□ 0.24
LMX1AQ8TE12 KRT18P32-201ENST00000424695 1287 ntBASIC16.53■□□□□ 0.24
LMX1AQ8TE12 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC16.53■□□□□ 0.24
LMX1AQ8TE12 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
LMX1AQ8TE12 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC16.53■□□□□ 0.24
LMX1AQ8TE12 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
LMX1AQ8TE12 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC16.53■□□□□ 0.24
LMX1AQ8TE12 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
LMX1AQ8TE12 RPL28-205ENST00000558131 444 ntTSL 5 BASIC16.53■□□□□ 0.24
LMX1AQ8TE12 AC243562.1-201ENST00000560672 389 ntBASIC16.53■□□□□ 0.24
LMX1AQ8TE12 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC16.53■□□□□ 0.24
LMX1AQ8TE12 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC16.53■□□□□ 0.24
LMX1AQ8TE12 AC092364.2-202ENST00000597012 1073 ntBASIC16.53■□□□□ 0.24
LMX1AQ8TE12 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC16.53■□□□□ 0.24
LMX1AQ8TE12 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
LMX1AQ8TE12 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
LMX1AQ8TE12 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
LMX1AQ8TE12 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
LMX1AQ8TE12 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
LMX1AQ8TE12 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC16.53■□□□□ 0.24
LMX1AQ8TE12 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
LMX1AQ8TE12 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
LMX1AQ8TE12 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC16.53■□□□□ 0.24
LMX1AQ8TE12 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
LMX1AQ8TE12 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
LMX1AQ8TE12 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
LMX1AQ8TE12 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
LMX1AQ8TE12 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
LMX1AQ8TE12 NOC2LP1-202ENST00000452600 2235 ntBASIC16.53■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 55 ms