Protein–RNA interactions for Protein: Q8N8U3

RTL3, Retrotransposon Gag-like protein 3, humanhuman

Known RBP Predictions only

Length 475 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTL3Q8N8U3 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
RTL3Q8N8U3 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
RTL3Q8N8U3 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
RTL3Q8N8U3 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC17.46■□□□□ 0.39
RTL3Q8N8U3 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
RTL3Q8N8U3 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
RTL3Q8N8U3 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
RTL3Q8N8U3 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
RTL3Q8N8U3 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
RTL3Q8N8U3 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
RTL3Q8N8U3 AC107918.2-201ENST00000530817 355 ntBASIC17.46■□□□□ 0.39
RTL3Q8N8U3 AC034105.1-201ENST00000563488 319 ntBASIC17.46■□□□□ 0.39
RTL3Q8N8U3 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC17.46■□□□□ 0.39
RTL3Q8N8U3 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
RTL3Q8N8U3 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC17.46■□□□□ 0.39
RTL3Q8N8U3 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
RTL3Q8N8U3 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC17.46■□□□□ 0.39
RTL3Q8N8U3 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC17.46■□□□□ 0.39
RTL3Q8N8U3 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
RTL3Q8N8U3 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC17.46■□□□□ 0.39
RTL3Q8N8U3 KRT8P49-201ENST00000604166 1432 ntBASIC17.46■□□□□ 0.39
RTL3Q8N8U3 AC020916.1-201ENST00000587762 1774 ntBASIC17.45■□□□□ 0.38
RTL3Q8N8U3 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
RTL3Q8N8U3 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
RTL3Q8N8U3 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
RTL3Q8N8U3 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
RTL3Q8N8U3 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
RTL3Q8N8U3 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
RTL3Q8N8U3 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
RTL3Q8N8U3 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
RTL3Q8N8U3 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
RTL3Q8N8U3 PKD1P1-201ENST00000458669 6805 ntBASIC17.45■□□□□ 0.38
RTL3Q8N8U3 LTB4R2-202ENST00000528054 3092 ntBASIC17.45■□□□□ 0.38
RTL3Q8N8U3 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
RTL3Q8N8U3 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
RTL3Q8N8U3 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC17.45■□□□□ 0.38
RTL3Q8N8U3 TOP3BP1-201ENST00000420768 1380 ntBASIC17.45■□□□□ 0.38
RTL3Q8N8U3 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC17.45■□□□□ 0.38
RTL3Q8N8U3 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC17.45■□□□□ 0.38
RTL3Q8N8U3 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
RTL3Q8N8U3 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC17.45■□□□□ 0.38
RTL3Q8N8U3 ATP6V0CP3-201ENST00000417255 467 ntBASIC17.45■□□□□ 0.38
RTL3Q8N8U3 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC17.45■□□□□ 0.38
RTL3Q8N8U3 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
RTL3Q8N8U3 VN2R19P-201ENST00000442399 1052 ntBASIC17.45■□□□□ 0.38
RTL3Q8N8U3 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
RTL3Q8N8U3 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC17.45■□□□□ 0.38
RTL3Q8N8U3 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
RTL3Q8N8U3 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC17.45■□□□□ 0.38
RTL3Q8N8U3 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
RTL3Q8N8U3 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
RTL3Q8N8U3 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
RTL3Q8N8U3 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
RTL3Q8N8U3 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
RTL3Q8N8U3 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC17.45■□□□□ 0.38
RTL3Q8N8U3 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC17.45■□□□□ 0.38
RTL3Q8N8U3 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC17.45■□□□□ 0.38
RTL3Q8N8U3 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
RTL3Q8N8U3 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC17.45■□□□□ 0.38
RTL3Q8N8U3 AC129492.6-201ENST00000611383 1305 ntBASIC17.45■□□□□ 0.38
RTL3Q8N8U3 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
RTL3Q8N8U3 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
RTL3Q8N8U3 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
RTL3Q8N8U3 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
RTL3Q8N8U3 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
RTL3Q8N8U3 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
RTL3Q8N8U3 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC17.44■□□□□ 0.38
RTL3Q8N8U3 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
RTL3Q8N8U3 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
RTL3Q8N8U3 AC022211.2-201ENST00000585075 2527 ntBASIC17.44■□□□□ 0.38
RTL3Q8N8U3 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
RTL3Q8N8U3 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
RTL3Q8N8U3 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
RTL3Q8N8U3 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC17.44■□□□□ 0.38
RTL3Q8N8U3 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
RTL3Q8N8U3 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC17.44■□□□□ 0.38
RTL3Q8N8U3 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC17.44■□□□□ 0.38
RTL3Q8N8U3 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC17.44■□□□□ 0.38
RTL3Q8N8U3 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
RTL3Q8N8U3 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC17.44■□□□□ 0.38
RTL3Q8N8U3 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
RTL3Q8N8U3 NME4-212ENST00000621774 904 ntTSL 3 BASIC17.44■□□□□ 0.38
RTL3Q8N8U3 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
RTL3Q8N8U3 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
RTL3Q8N8U3 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
RTL3Q8N8U3 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
RTL3Q8N8U3 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
RTL3Q8N8U3 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
RTL3Q8N8U3 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
RTL3Q8N8U3 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
RTL3Q8N8U3 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC17.44■□□□□ 0.38
RTL3Q8N8U3 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
RTL3Q8N8U3 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
RTL3Q8N8U3 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
RTL3Q8N8U3 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
RTL3Q8N8U3 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
RTL3Q8N8U3 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
RTL3Q8N8U3 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
RTL3Q8N8U3 ZNF259P1-201ENST00000407656 1365 ntBASIC17.43■□□□□ 0.38
RTL3Q8N8U3 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms