Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
CCDC58Q4VC31 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC58Q4VC31 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC58Q4VC31 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC58Q4VC31 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC58Q4VC31 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC15.32■□□□□ 0.04
CCDC58Q4VC31 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC15.32■□□□□ 0.04
CCDC58Q4VC31 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC15.32■□□□□ 0.04
CCDC58Q4VC31 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC58Q4VC31 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC58Q4VC31 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
CCDC58Q4VC31 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC58Q4VC31 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC58Q4VC31 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC58Q4VC31 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC58Q4VC31 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
CCDC58Q4VC31 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC58Q4VC31 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC15.31■□□□□ 0.04
CCDC58Q4VC31 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC58Q4VC31 PAUPAR-201ENST00000630360 2965 ntBASIC15.31■□□□□ 0.04
CCDC58Q4VC31 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC58Q4VC31 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
CCDC58Q4VC31 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC15.31■□□□□ 0.04
CCDC58Q4VC31 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC58Q4VC31 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC58Q4VC31 WT1-209ENST00000530998 2421 ntTSL 2 BASIC15.31■□□□□ 0.04
CCDC58Q4VC31 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
CCDC58Q4VC31 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC58Q4VC31 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC58Q4VC31 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC58Q4VC31 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC15.31■□□□□ 0.04
CCDC58Q4VC31 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC58Q4VC31 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC15.31■□□□□ 0.04
CCDC58Q4VC31 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC15.31■□□□□ 0.04
CCDC58Q4VC31 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC15.31■□□□□ 0.04
CCDC58Q4VC31 SNORA78-201ENST00000459373 127 ntBASIC15.31■□□□□ 0.04
CCDC58Q4VC31 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC15.31■□□□□ 0.04
CCDC58Q4VC31 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC15.31■□□□□ 0.04
CCDC58Q4VC31 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC15.31■□□□□ 0.04
CCDC58Q4VC31 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC15.31■□□□□ 0.04
CCDC58Q4VC31 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC15.31■□□□□ 0.04
CCDC58Q4VC31 AL031432.5-201ENST00000641059 760 ntBASIC15.31■□□□□ 0.04
CCDC58Q4VC31 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC58Q4VC31 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC58Q4VC31 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC58Q4VC31 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC58Q4VC31 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC58Q4VC31 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC58Q4VC31 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC58Q4VC31 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC58Q4VC31 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
CCDC58Q4VC31 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC58Q4VC31 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC15.31■□□□□ 0.04
CCDC58Q4VC31 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC58Q4VC31 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC58Q4VC31 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC58Q4VC31 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC58Q4VC31 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC58Q4VC31 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
CCDC58Q4VC31 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC58Q4VC31 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC58Q4VC31 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC58Q4VC31 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
CCDC58Q4VC31 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
CCDC58Q4VC31 CICP4-201ENST00000447359 2812 ntBASIC15.3■□□□□ 0.04
CCDC58Q4VC31 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC58Q4VC31 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
CCDC58Q4VC31 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
CCDC58Q4VC31 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC58Q4VC31 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC58Q4VC31 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC58Q4VC31 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
CCDC58Q4VC31 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC58Q4VC31 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC58Q4VC31 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC58Q4VC31 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC58Q4VC31 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC58Q4VC31 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC58Q4VC31 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC58Q4VC31 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC15.3■□□□□ 0.04
CCDC58Q4VC31 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC58Q4VC31 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC58Q4VC31 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC58Q4VC31 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC15.3■□□□□ 0.04
CCDC58Q4VC31 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
CCDC58Q4VC31 AL353692.3-201ENST00000407031 1396 ntBASIC15.3■□□□□ 0.04
CCDC58Q4VC31 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC15.3■□□□□ 0.04
CCDC58Q4VC31 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC58Q4VC31 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC15.3■□□□□ 0.04
CCDC58Q4VC31 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
CCDC58Q4VC31 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC58Q4VC31 PON3-205ENST00000451904 1053 ntTSL 3 BASIC15.3■□□□□ 0.04
CCDC58Q4VC31 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC58Q4VC31 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC58Q4VC31 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC58Q4VC31 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC15.3■□□□□ 0.04
CCDC58Q4VC31 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC15.3■□□□□ 0.04
CCDC58Q4VC31 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
CCDC58Q4VC31 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC15.3■□□□□ 0.04
CCDC58Q4VC31 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms