Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
HSPG2P98160 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
HSPG2P98160 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
HSPG2P98160 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC10.37□□□□□ -0.75
HSPG2P98160 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
HSPG2P98160 RAD18-204ENST00000418463 563 ntTSL 4 BASIC10.37□□□□□ -0.75
HSPG2P98160 RAD18-205ENST00000421052 582 ntTSL 3 BASIC10.37□□□□□ -0.75
HSPG2P98160 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC10.37□□□□□ -0.75
HSPG2P98160 AC092337.1-201ENST00000568699 1129 ntBASIC10.37□□□□□ -0.75
HSPG2P98160 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC10.37□□□□□ -0.75
HSPG2P98160 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC10.37□□□□□ -0.75
HSPG2P98160 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC10.37□□□□□ -0.75
HSPG2P98160 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC10.37□□□□□ -0.75
HSPG2P98160 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
HSPG2P98160 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
HSPG2P98160 AC007969.1-201ENST00000433675 447 ntBASIC10.37□□□□□ -0.75
HSPG2P98160 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC10.37□□□□□ -0.75
HSPG2P98160 RPL13AP20-201ENST00000459725 609 ntBASIC10.37□□□□□ -0.75
HSPG2P98160 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC10.37□□□□□ -0.75
HSPG2P98160 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC10.37□□□□□ -0.75
HSPG2P98160 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC10.37□□□□□ -0.75
HSPG2P98160 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC10.37□□□□□ -0.75
HSPG2P98160 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC10.37□□□□□ -0.75
HSPG2P98160 SPCS2P2-201ENST00000603270 608 ntBASIC10.37□□□□□ -0.75
HSPG2P98160 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
HSPG2P98160 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
HSPG2P98160 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
HSPG2P98160 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
HSPG2P98160 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC10.37□□□□□ -0.75
HSPG2P98160 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC10.37□□□□□ -0.75
HSPG2P98160 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC10.37□□□□□ -0.75
HSPG2P98160 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
HSPG2P98160 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC10.37□□□□□ -0.75
HSPG2P98160 HILPDA-202ENST00000435296 785 ntAPPRIS P1 TSL 2 BASIC10.37□□□□□ -0.75
HSPG2P98160 AP001258.2-201ENST00000529891 490 ntBASIC10.37□□□□□ -0.75
HSPG2P98160 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC10.37□□□□□ -0.75
HSPG2P98160 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC10.37□□□□□ -0.75
HSPG2P98160 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC10.37□□□□□ -0.75
HSPG2P98160 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC10.37□□□□□ -0.75
HSPG2P98160 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC10.37□□□□□ -0.75
HSPG2P98160 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC10.37□□□□□ -0.75
HSPG2P98160 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC10.37□□□□□ -0.75
HSPG2P98160 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC10.37□□□□□ -0.75
HSPG2P98160 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
HSPG2P98160 PODN-203ENST00000395871 2744 ntTSL 5 BASIC10.37□□□□□ -0.75
HSPG2P98160 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
HSPG2P98160 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
HSPG2P98160 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
HSPG2P98160 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC10.37□□□□□ -0.75
HSPG2P98160 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC10.37□□□□□ -0.75
HSPG2P98160 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC10.37□□□□□ -0.75
HSPG2P98160 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC10.37□□□□□ -0.75
HSPG2P98160 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
HSPG2P98160 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC10.37□□□□□ -0.75
HSPG2P98160 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC10.37□□□□□ -0.75
HSPG2P98160 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
HSPG2P98160 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
HSPG2P98160 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC10.36□□□□□ -0.75
HSPG2P98160 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
HSPG2P98160 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
HSPG2P98160 RNASE10-201ENST00000328444 717 ntAPPRIS P1 BASIC10.36□□□□□ -0.75
HSPG2P98160 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC10.36□□□□□ -0.75
HSPG2P98160 AGER-203ENST00000375065 665 ntTSL 2 BASIC10.36□□□□□ -0.75
HSPG2P98160 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
HSPG2P98160 PSMG3-203ENST00000404674 774 ntAPPRIS P1 TSL 2 BASIC10.36□□□□□ -0.75
HSPG2P98160 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC10.36□□□□□ -0.75
HSPG2P98160 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC10.36□□□□□ -0.75
HSPG2P98160 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC10.36□□□□□ -0.75
HSPG2P98160 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC10.36□□□□□ -0.75
HSPG2P98160 AC135776.1-201ENST00000319817 2481 ntBASIC10.36□□□□□ -0.75
HSPG2P98160 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC10.36□□□□□ -0.75
HSPG2P98160 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC10.36□□□□□ -0.75
HSPG2P98160 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC10.36□□□□□ -0.75
HSPG2P98160 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
HSPG2P98160 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC10.36□□□□□ -0.75
HSPG2P98160 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
HSPG2P98160 MPRIPP1-201ENST00000452433 1089 ntBASIC10.36□□□□□ -0.75
HSPG2P98160 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC10.36□□□□□ -0.75
HSPG2P98160 AC008736.2-201ENST00000587554 516 ntTSL 2 BASIC10.36□□□□□ -0.75
HSPG2P98160 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC10.36□□□□□ -0.75
HSPG2P98160 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
HSPG2P98160 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC10.36□□□□□ -0.75
HSPG2P98160 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
HSPG2P98160 FLJ13224-201ENST00000313737 1514 ntBASIC10.36□□□□□ -0.75
HSPG2P98160 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC10.36□□□□□ -0.75
HSPG2P98160 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
HSPG2P98160 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC10.36□□□□□ -0.75
HSPG2P98160 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC10.36□□□□□ -0.75
HSPG2P98160 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC10.36□□□□□ -0.75
HSPG2P98160 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC10.36□□□□□ -0.75
HSPG2P98160 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC10.36□□□□□ -0.75
HSPG2P98160 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC10.36□□□□□ -0.75
HSPG2P98160 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
HSPG2P98160 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
HSPG2P98160 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
HSPG2P98160 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC10.36□□□□□ -0.75
HSPG2P98160 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC10.36□□□□□ -0.75
HSPG2P98160 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC10.36□□□□□ -0.75
HSPG2P98160 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
HSPG2P98160 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC10.35□□□□□ -0.75
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms