Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 AL355877.3-201ENST00000622820 899 ntBASIC15.27■□□□□ 0.04
CLRN1P58418 AC012313.10-201ENST00000623509 926 ntBASIC15.27■□□□□ 0.04
CLRN1P58418 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC15.27■□□□□ 0.03
CLRN1P58418 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CLRN1P58418 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
CLRN1P58418 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CLRN1P58418 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC15.27■□□□□ 0.03
CLRN1P58418 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC15.27■□□□□ 0.03
CLRN1P58418 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CLRN1P58418 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CLRN1P58418 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
CLRN1P58418 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CLRN1P58418 NCF1C-201ENST00000438382 1427 ntBASIC15.26■□□□□ 0.03
CLRN1P58418 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CLRN1P58418 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CLRN1P58418 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
CLRN1P58418 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CLRN1P58418 PAN3-AS1-201ENST00000563843 1351 ntBASIC15.26■□□□□ 0.03
CLRN1P58418 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CLRN1P58418 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
CLRN1P58418 AC092068.3-201ENST00000587894 2016 ntBASIC15.26■□□□□ 0.03
CLRN1P58418 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC15.26■□□□□ 0.03
CLRN1P58418 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
CLRN1P58418 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CLRN1P58418 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CLRN1P58418 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
CLRN1P58418 NF2-208ENST00000403435 2568 ntTSL 5 BASIC15.26■□□□□ 0.03
CLRN1P58418 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
CLRN1P58418 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
CLRN1P58418 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CLRN1P58418 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CLRN1P58418 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CLRN1P58418 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CLRN1P58418 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
CLRN1P58418 NABP1-203ENST00000409510 843 ntTSL 5 BASIC15.26■□□□□ 0.03
CLRN1P58418 PRYP5-201ENST00000451909 266 ntBASIC15.26■□□□□ 0.03
CLRN1P58418 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
CLRN1P58418 MSRA-206ENST00000521209 814 ntTSL 3 BASIC15.26■□□□□ 0.03
CLRN1P58418 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
CLRN1P58418 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CLRN1P58418 IRF8-202ENST00000562492 946 ntTSL 3 BASIC15.26■□□□□ 0.03
CLRN1P58418 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC15.26■□□□□ 0.03
CLRN1P58418 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC15.26■□□□□ 0.03
CLRN1P58418 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC15.26■□□□□ 0.03
CLRN1P58418 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
CLRN1P58418 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC15.26■□□□□ 0.03
CLRN1P58418 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CLRN1P58418 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC15.26■□□□□ 0.03
CLRN1P58418 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
CLRN1P58418 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CLRN1P58418 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CLRN1P58418 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC15.26■□□□□ 0.03
CLRN1P58418 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CLRN1P58418 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CLRN1P58418 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
CLRN1P58418 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CLRN1P58418 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
CLRN1P58418 AC005915.1-201ENST00000624912 2018 ntBASIC15.26■□□□□ 0.03
CLRN1P58418 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CLRN1P58418 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CLRN1P58418 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLRN1P58418 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLRN1P58418 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
CLRN1P58418 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC15.25■□□□□ 0.03
CLRN1P58418 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC15.25■□□□□ 0.03
CLRN1P58418 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC15.25■□□□□ 0.03
CLRN1P58418 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CLRN1P58418 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CLRN1P58418 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLRN1P58418 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLRN1P58418 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLRN1P58418 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CLRN1P58418 IPPK-202ENST00000375522 882 ntTSL 3 BASIC15.25■□□□□ 0.03
CLRN1P58418 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC15.25■□□□□ 0.03
CLRN1P58418 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC15.25■□□□□ 0.03
CLRN1P58418 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC15.25■□□□□ 0.03
CLRN1P58418 SAPCD2P3-201ENST00000455031 850 ntBASIC15.25■□□□□ 0.03
CLRN1P58418 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLRN1P58418 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC15.25■□□□□ 0.03
CLRN1P58418 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC15.25■□□□□ 0.03
CLRN1P58418 REXO1L6P-202ENST00000619970 1078 ntBASIC15.25■□□□□ 0.03
CLRN1P58418 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLRN1P58418 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CLRN1P58418 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLRN1P58418 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CLRN1P58418 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
CLRN1P58418 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLRN1P58418 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLRN1P58418 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLRN1P58418 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CLRN1P58418 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC15.25■□□□□ 0.03
CLRN1P58418 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC15.25■□□□□ 0.03
CLRN1P58418 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
CLRN1P58418 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLRN1P58418 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC15.24■□□□□ 0.03
CLRN1P58418 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLRN1P58418 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLRN1P58418 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
CLRN1P58418 FRMD8P1-201ENST00000440433 1524 ntBASIC15.24■□□□□ 0.03
CLRN1P58418 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms