Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 ABR-204ENST00000543210 1049 ntTSL 2 BASIC16.78■□□□□ 0.28
PKNOX1P55347 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC16.78■□□□□ 0.28
PKNOX1P55347 ABR-217ENST00000572441 563 ntTSL 4 BASIC16.78■□□□□ 0.28
PKNOX1P55347 NTF6B-201ENST00000591913 560 ntBASIC16.78■□□□□ 0.28
PKNOX1P55347 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC16.78■□□□□ 0.28
PKNOX1P55347 AD001527.2-201ENST00000622994 785 ntBASIC16.78■□□□□ 0.28
PKNOX1P55347 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
PKNOX1P55347 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
PKNOX1P55347 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC16.78■□□□□ 0.28
PKNOX1P55347 AC026691.1-201ENST00000602502 2017 ntBASIC16.78■□□□□ 0.28
PKNOX1P55347 GCK-209ENST00000616242 2260 ntTSL 5 BASIC16.78■□□□□ 0.28
PKNOX1P55347 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
PKNOX1P55347 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PKNOX1P55347 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PKNOX1P55347 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
PKNOX1P55347 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
PKNOX1P55347 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
PKNOX1P55347 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC16.78■□□□□ 0.28
PKNOX1P55347 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PKNOX1P55347 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
PKNOX1P55347 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PKNOX1P55347 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC16.78■□□□□ 0.28
PKNOX1P55347 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
PKNOX1P55347 AC006449.5-201ENST00000610658 2098 ntBASIC16.77■□□□□ 0.28
PKNOX1P55347 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
PKNOX1P55347 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
PKNOX1P55347 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
PKNOX1P55347 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
PKNOX1P55347 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC16.77■□□□□ 0.28
PKNOX1P55347 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
PKNOX1P55347 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
PKNOX1P55347 FRMD6-AS1-201ENST00000617151 2229 ntBASIC16.77■□□□□ 0.28
PKNOX1P55347 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
PKNOX1P55347 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PKNOX1P55347 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC16.77■□□□□ 0.28
PKNOX1P55347 AC078925.2-201ENST00000624013 1973 ntBASIC16.77■□□□□ 0.28
PKNOX1P55347 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
PKNOX1P55347 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
PKNOX1P55347 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PKNOX1P55347 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PKNOX1P55347 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PKNOX1P55347 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
PKNOX1P55347 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
PKNOX1P55347 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC16.77■□□□□ 0.28
PKNOX1P55347 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PKNOX1P55347 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PKNOX1P55347 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PKNOX1P55347 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
PKNOX1P55347 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC16.77■□□□□ 0.28
PKNOX1P55347 KLF4P1-201ENST00000412782 1185 ntBASIC16.77■□□□□ 0.28
PKNOX1P55347 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC16.77■□□□□ 0.28
PKNOX1P55347 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC16.77■□□□□ 0.28
PKNOX1P55347 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
PKNOX1P55347 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
PKNOX1P55347 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
PKNOX1P55347 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
PKNOX1P55347 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC16.77■□□□□ 0.27
PKNOX1P55347 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
PKNOX1P55347 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC16.77■□□□□ 0.27
PKNOX1P55347 STX3-203ENST00000529177 1571 ntTSL 2 BASIC16.77■□□□□ 0.27
PKNOX1P55347 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC16.77■□□□□ 0.27
PKNOX1P55347 AC016734.2-201ENST00000624325 1377 ntBASIC16.77■□□□□ 0.27
PKNOX1P55347 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PKNOX1P55347 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
PKNOX1P55347 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PKNOX1P55347 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC16.76■□□□□ 0.27
PKNOX1P55347 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PKNOX1P55347 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PKNOX1P55347 AC005332.1-201ENST00000577698 1310 ntBASIC16.76■□□□□ 0.27
PKNOX1P55347 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
PKNOX1P55347 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PKNOX1P55347 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
PKNOX1P55347 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PKNOX1P55347 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC16.76■□□□□ 0.27
PKNOX1P55347 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
PKNOX1P55347 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
PKNOX1P55347 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PKNOX1P55347 AC132938.5-201ENST00000624980 1813 ntBASIC16.76■□□□□ 0.27
PKNOX1P55347 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PKNOX1P55347 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PKNOX1P55347 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC16.76■□□□□ 0.27
PKNOX1P55347 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC16.76■□□□□ 0.27
PKNOX1P55347 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC16.76■□□□□ 0.27
PKNOX1P55347 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC16.76■□□□□ 0.27
PKNOX1P55347 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC16.76■□□□□ 0.27
PKNOX1P55347 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC16.76■□□□□ 0.27
PKNOX1P55347 AC091607.1-201ENST00000490318 1060 ntBASIC16.76■□□□□ 0.27
PKNOX1P55347 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
PKNOX1P55347 PTK2-216ENST00000519881 863 ntTSL 3 BASIC16.76■□□□□ 0.27
PKNOX1P55347 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PKNOX1P55347 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PKNOX1P55347 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC16.76■□□□□ 0.27
PKNOX1P55347 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
PKNOX1P55347 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PKNOX1P55347 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC16.76■□□□□ 0.27
PKNOX1P55347 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
PKNOX1P55347 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
PKNOX1P55347 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
PKNOX1P55347 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC16.76■□□□□ 0.27
PKNOX1P55347 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms