Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC19.94■□□□□ 0.78
MRE11P49959 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
MRE11P49959 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
MRE11P49959 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
MRE11P49959 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC19.94■□□□□ 0.78
MRE11P49959 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
MRE11P49959 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
MRE11P49959 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC19.94■□□□□ 0.78
MRE11P49959 TBC1D3P2-202ENST00000577902 1649 ntBASIC19.94■□□□□ 0.78
MRE11P49959 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC19.94■□□□□ 0.78
MRE11P49959 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC19.94■□□□□ 0.78
MRE11P49959 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC19.94■□□□□ 0.78
MRE11P49959 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
MRE11P49959 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
MRE11P49959 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
MRE11P49959 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
MRE11P49959 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
MRE11P49959 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
MRE11P49959 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
MRE11P49959 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
MRE11P49959 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
MRE11P49959 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
MRE11P49959 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
MRE11P49959 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC19.93■□□□□ 0.78
MRE11P49959 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
MRE11P49959 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
MRE11P49959 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
MRE11P49959 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
MRE11P49959 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
MRE11P49959 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
MRE11P49959 SKP2-204ENST00000508514 821 ntTSL 3 BASIC19.93■□□□□ 0.78
MRE11P49959 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC19.93■□□□□ 0.78
MRE11P49959 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC19.93■□□□□ 0.78
MRE11P49959 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
MRE11P49959 AL445675.2-201ENST00000620291 557 ntBASIC19.93■□□□□ 0.78
MRE11P49959 HOTTIP_1.1-201ENST00000620415 57 ntBASIC19.93■□□□□ 0.78
MRE11P49959 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
MRE11P49959 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
MRE11P49959 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC19.93■□□□□ 0.78
MRE11P49959 FES-204ENST00000414248 2327 ntTSL 2 BASIC19.93■□□□□ 0.78
MRE11P49959 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
MRE11P49959 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
MRE11P49959 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
MRE11P49959 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
MRE11P49959 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC19.93■□□□□ 0.78
MRE11P49959 LINC01311-201ENST00000565162 1445 ntBASIC19.93■□□□□ 0.78
MRE11P49959 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC19.93■□□□□ 0.78
MRE11P49959 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
MRE11P49959 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
MRE11P49959 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
MRE11P49959 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
MRE11P49959 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
MRE11P49959 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC19.92■□□□□ 0.78
MRE11P49959 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC19.92■□□□□ 0.78
MRE11P49959 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
MRE11P49959 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
MRE11P49959 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
MRE11P49959 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC19.92■□□□□ 0.78
MRE11P49959 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
MRE11P49959 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
MRE11P49959 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
MRE11P49959 FAM220CP-201ENST00000395253 831 ntBASIC19.92■□□□□ 0.78
MRE11P49959 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC19.92■□□□□ 0.78
MRE11P49959 MESTP1-201ENST00000404287 994 ntBASIC19.92■□□□□ 0.78
MRE11P49959 UNC93B7-201ENST00000509439 705 ntBASIC19.92■□□□□ 0.78
MRE11P49959 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC19.92■□□□□ 0.78
MRE11P49959 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC19.92■□□□□ 0.78
MRE11P49959 BCL10-202ENST00000620248 774 ntTSL 5 BASIC19.92■□□□□ 0.78
MRE11P49959 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC19.92■□□□□ 0.78
MRE11P49959 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
MRE11P49959 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
MRE11P49959 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC19.92■□□□□ 0.78
MRE11P49959 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
MRE11P49959 FSCN1P1-201ENST00000568912 1481 ntBASIC19.92■□□□□ 0.78
MRE11P49959 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
MRE11P49959 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
MRE11P49959 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC19.92■□□□□ 0.78
MRE11P49959 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
MRE11P49959 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
MRE11P49959 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
MRE11P49959 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
MRE11P49959 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
MRE11P49959 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
MRE11P49959 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC19.91■□□□□ 0.78
MRE11P49959 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC19.91■□□□□ 0.78
MRE11P49959 ANKRD20A18P-201ENST00000359341 492 ntBASIC19.91■□□□□ 0.78
MRE11P49959 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
MRE11P49959 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
MRE11P49959 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
MRE11P49959 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
MRE11P49959 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC19.91■□□□□ 0.78
MRE11P49959 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC19.91■□□□□ 0.78
MRE11P49959 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC19.91■□□□□ 0.78
MRE11P49959 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC19.91■□□□□ 0.78
MRE11P49959 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
MRE11P49959 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
MRE11P49959 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC19.91■□□□□ 0.78
MRE11P49959 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
MRE11P49959 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
MRE11P49959 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC19.91■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms