Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
RFC3P40938 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
RFC3P40938 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC15.63■□□□□ 0.09
RFC3P40938 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
RFC3P40938 AC008894.3-201ENST00000624324 3103 ntBASIC15.63■□□□□ 0.09
RFC3P40938 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
RFC3P40938 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
RFC3P40938 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC15.63■□□□□ 0.09
RFC3P40938 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC15.63■□□□□ 0.09
RFC3P40938 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
RFC3P40938 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
RFC3P40938 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
RFC3P40938 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC15.63■□□□□ 0.09
RFC3P40938 AC008764.6-201ENST00000595909 2069 ntBASIC15.63■□□□□ 0.09
RFC3P40938 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
RFC3P40938 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
RFC3P40938 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
RFC3P40938 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC15.63■□□□□ 0.09
RFC3P40938 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
RFC3P40938 CD82-202ENST00000342935 967 ntTSL 5 BASIC15.63■□□□□ 0.09
RFC3P40938 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
RFC3P40938 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
RFC3P40938 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC15.63■□□□□ 0.09
RFC3P40938 HNRNPA1P28-201ENST00000424481 961 ntBASIC15.63■□□□□ 0.09
RFC3P40938 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC15.63■□□□□ 0.09
RFC3P40938 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC15.63■□□□□ 0.09
RFC3P40938 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC15.63■□□□□ 0.09
RFC3P40938 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC15.63■□□□□ 0.09
RFC3P40938 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC15.63■□□□□ 0.09
RFC3P40938 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC15.63■□□□□ 0.09
RFC3P40938 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
RFC3P40938 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
RFC3P40938 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
RFC3P40938 AC134043.2-201ENST00000624206 2238 ntBASIC15.63■□□□□ 0.09
RFC3P40938 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC15.63■□□□□ 0.09
RFC3P40938 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
RFC3P40938 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
RFC3P40938 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
RFC3P40938 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
RFC3P40938 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
RFC3P40938 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
RFC3P40938 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
RFC3P40938 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC15.62■□□□□ 0.09
RFC3P40938 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
RFC3P40938 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
RFC3P40938 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
RFC3P40938 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
RFC3P40938 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
RFC3P40938 COA5-202ENST00000409997 557 ntTSL 4 BASIC15.62■□□□□ 0.09
RFC3P40938 AC211486.1-202ENST00000416371 468 ntBASIC15.62■□□□□ 0.09
RFC3P40938 ATP6V0CP3-201ENST00000417255 467 ntBASIC15.62■□□□□ 0.09
RFC3P40938 MCCD1P2-201ENST00000423228 335 ntBASIC15.62■□□□□ 0.09
RFC3P40938 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC15.62■□□□□ 0.09
RFC3P40938 AC211476.1-201ENST00000503899 468 ntBASIC15.62■□□□□ 0.09
RFC3P40938 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC15.62■□□□□ 0.09
RFC3P40938 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC15.62■□□□□ 0.09
RFC3P40938 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC15.62■□□□□ 0.09
RFC3P40938 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
RFC3P40938 PC-214ENST00000628663 1470 ntTSL 5 BASIC15.62■□□□□ 0.09
RFC3P40938 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
RFC3P40938 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
RFC3P40938 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
RFC3P40938 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC15.62■□□□□ 0.09
RFC3P40938 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC15.62■□□□□ 0.09
RFC3P40938 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
RFC3P40938 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC15.62■□□□□ 0.09
RFC3P40938 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
RFC3P40938 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC15.61■□□□□ 0.09
RFC3P40938 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC15.61■□□□□ 0.09
RFC3P40938 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
RFC3P40938 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC15.61■□□□□ 0.09
RFC3P40938 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
RFC3P40938 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
RFC3P40938 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
RFC3P40938 AC025580.3-201ENST00000617932 1424 ntBASIC15.61■□□□□ 0.09
RFC3P40938 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
RFC3P40938 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
RFC3P40938 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC15.61■□□□□ 0.09
RFC3P40938 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
RFC3P40938 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
RFC3P40938 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
RFC3P40938 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
RFC3P40938 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC15.61■□□□□ 0.09
RFC3P40938 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC15.61■□□□□ 0.09
RFC3P40938 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC15.61■□□□□ 0.09
RFC3P40938 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC15.61■□□□□ 0.09
RFC3P40938 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC15.61■□□□□ 0.09
RFC3P40938 KRT19P2-202ENST00000557173 1012 ntBASIC15.61■□□□□ 0.09
RFC3P40938 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC15.61■□□□□ 0.09
RFC3P40938 AC005829.1-201ENST00000570002 483 ntBASIC15.61■□□□□ 0.09
RFC3P40938 MIR4469-201ENST00000583919 79 ntBASIC15.61■□□□□ 0.09
RFC3P40938 AP001160.2-201ENST00000596071 487 ntBASIC15.61■□□□□ 0.09
RFC3P40938 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC15.61■□□□□ 0.09
RFC3P40938 AQP6-205ENST00000618286 829 ntTSL 5 BASIC15.61■□□□□ 0.09
RFC3P40938 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC15.61■□□□□ 0.09
RFC3P40938 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
RFC3P40938 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
RFC3P40938 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
RFC3P40938 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
RFC3P40938 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms