Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CIITAP33076 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC19.14■□□□□ 0.65
CIITAP33076 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CIITAP33076 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CIITAP33076 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CIITAP33076 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
CIITAP33076 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CIITAP33076 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CIITAP33076 AC090340.1-201ENST00000620778 4980 ntBASIC19.13■□□□□ 0.65
CIITAP33076 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CIITAP33076 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CIITAP33076 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC19.13■□□□□ 0.65
CIITAP33076 HMGA1P7-201ENST00000406908 502 ntBASIC19.13■□□□□ 0.65
CIITAP33076 RPP21-221ENST00000428040 594 ntTSL 2 BASIC19.13■□□□□ 0.65
CIITAP33076 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
CIITAP33076 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CIITAP33076 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC19.13■□□□□ 0.65
CIITAP33076 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC19.13■□□□□ 0.65
CIITAP33076 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC19.13■□□□□ 0.65
CIITAP33076 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC19.13■□□□□ 0.65
CIITAP33076 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC19.13■□□□□ 0.65
CIITAP33076 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC19.13■□□□□ 0.65
CIITAP33076 MTDHP5-201ENST00000598980 586 ntBASIC19.13■□□□□ 0.65
CIITAP33076 AC013467.2-201ENST00000605472 835 ntBASIC19.13■□□□□ 0.65
CIITAP33076 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC19.13■□□□□ 0.65
CIITAP33076 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC19.13■□□□□ 0.65
CIITAP33076 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC19.13■□□□□ 0.65
CIITAP33076 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CIITAP33076 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CIITAP33076 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CIITAP33076 HARS-204ENST00000438307 1789 ntTSL 2 BASIC19.13■□□□□ 0.65
CIITAP33076 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
CIITAP33076 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CIITAP33076 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CIITAP33076 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CIITAP33076 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC19.13■□□□□ 0.65
CIITAP33076 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC19.13■□□□□ 0.65
CIITAP33076 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
CIITAP33076 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC19.13■□□□□ 0.65
CIITAP33076 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CIITAP33076 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
CIITAP33076 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
CIITAP33076 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CIITAP33076 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CIITAP33076 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CIITAP33076 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CIITAP33076 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC19.12■□□□□ 0.65
CIITAP33076 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
CIITAP33076 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CIITAP33076 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC19.12■□□□□ 0.65
CIITAP33076 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CIITAP33076 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CIITAP33076 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CIITAP33076 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CIITAP33076 AC131009.4-201ENST00000624048 1740 ntBASIC19.12■□□□□ 0.65
CIITAP33076 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC19.12■□□□□ 0.65
CIITAP33076 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CIITAP33076 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CIITAP33076 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
CIITAP33076 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC19.12■□□□□ 0.65
CIITAP33076 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC19.12■□□□□ 0.65
CIITAP33076 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
CIITAP33076 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CIITAP33076 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CIITAP33076 HOTTIP_1.1-201ENST00000620415 57 ntBASIC19.12■□□□□ 0.65
CIITAP33076 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CIITAP33076 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CIITAP33076 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
CIITAP33076 PCDHB17P-201ENST00000539533 2393 ntBASIC19.12■□□□□ 0.65
CIITAP33076 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CIITAP33076 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CIITAP33076 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CIITAP33076 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CIITAP33076 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
CIITAP33076 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CIITAP33076 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CIITAP33076 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC19.11■□□□□ 0.65
CIITAP33076 LINC00895-201ENST00000629028 1637 ntBASIC19.11■□□□□ 0.65
CIITAP33076 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CIITAP33076 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC19.11■□□□□ 0.65
CIITAP33076 AC012569.1-201ENST00000591191 1524 ntBASIC19.11■□□□□ 0.65
CIITAP33076 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CIITAP33076 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC19.11■□□□□ 0.65
CIITAP33076 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CIITAP33076 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
CIITAP33076 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CIITAP33076 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
CIITAP33076 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CIITAP33076 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
CIITAP33076 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CIITAP33076 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC19.11■□□□□ 0.65
CIITAP33076 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
CIITAP33076 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC19.11■□□□□ 0.65
CIITAP33076 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CIITAP33076 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC19.11■□□□□ 0.65
CIITAP33076 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
CIITAP33076 HR-201ENST00000312841 5351 ntTSL 5 BASIC19.11■□□□□ 0.65
CIITAP33076 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CIITAP33076 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
CIITAP33076 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms