Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
LIG1P18858 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
LIG1P18858 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LIG1P18858 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
LIG1P18858 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LIG1P18858 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC19.67■□□□□ 0.74
LIG1P18858 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LIG1P18858 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
LIG1P18858 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
LIG1P18858 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC19.67■□□□□ 0.74
LIG1P18858 UNC93B7-201ENST00000509439 705 ntBASIC19.67■□□□□ 0.74
LIG1P18858 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC19.67■□□□□ 0.74
LIG1P18858 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC19.67■□□□□ 0.74
LIG1P18858 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC19.67■□□□□ 0.74
LIG1P18858 BNIP3P18-201ENST00000593976 575 ntBASIC19.67■□□□□ 0.74
LIG1P18858 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC19.67■□□□□ 0.74
LIG1P18858 AL121772.3-201ENST00000610840 674 ntBASIC19.67■□□□□ 0.74
LIG1P18858 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC19.67■□□□□ 0.74
LIG1P18858 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LIG1P18858 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC19.67■□□□□ 0.74
LIG1P18858 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC19.67■□□□□ 0.74
LIG1P18858 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
LIG1P18858 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
LIG1P18858 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC19.67■□□□□ 0.74
LIG1P18858 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LIG1P18858 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
LIG1P18858 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC19.67■□□□□ 0.74
LIG1P18858 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC19.67■□□□□ 0.74
LIG1P18858 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LIG1P18858 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
LIG1P18858 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
LIG1P18858 AGK-211ENST00000629555 2765 ntTSL 5 BASIC19.66■□□□□ 0.74
LIG1P18858 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
LIG1P18858 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
LIG1P18858 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
LIG1P18858 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC19.66■□□□□ 0.74
LIG1P18858 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC19.66■□□□□ 0.74
LIG1P18858 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
LIG1P18858 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
LIG1P18858 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
LIG1P18858 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LIG1P18858 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LIG1P18858 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LIG1P18858 ENSA-206ENST00000361631 725 ntTSL 2 BASIC19.66■□□□□ 0.74
LIG1P18858 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LIG1P18858 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
LIG1P18858 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC19.66■□□□□ 0.74
LIG1P18858 CDV3-207ENST00000508481 661 ntTSL 3 BASIC19.66■□□□□ 0.74
LIG1P18858 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC19.66■□□□□ 0.74
LIG1P18858 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC19.66■□□□□ 0.74
LIG1P18858 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC19.66■□□□□ 0.74
LIG1P18858 IFNL4P1-201ENST00000607083 540 ntBASIC19.66■□□□□ 0.74
LIG1P18858 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC19.66■□□□□ 0.74
LIG1P18858 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
LIG1P18858 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
LIG1P18858 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC19.66■□□□□ 0.74
LIG1P18858 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC19.66■□□□□ 0.74
LIG1P18858 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LIG1P18858 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
LIG1P18858 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LIG1P18858 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LIG1P18858 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
LIG1P18858 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC19.66■□□□□ 0.74
LIG1P18858 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
LIG1P18858 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
LIG1P18858 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LIG1P18858 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LIG1P18858 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LIG1P18858 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LIG1P18858 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
LIG1P18858 AC026691.1-201ENST00000602502 2017 ntBASIC19.65■□□□□ 0.74
LIG1P18858 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LIG1P18858 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
LIG1P18858 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC19.65■□□□□ 0.74
LIG1P18858 KRT18P31-201ENST00000506277 1292 ntBASIC19.65■□□□□ 0.74
LIG1P18858 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LIG1P18858 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
LIG1P18858 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
LIG1P18858 AL353801.3-201ENST00000609898 542 ntBASIC19.65■□□□□ 0.74
LIG1P18858 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
LIG1P18858 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LIG1P18858 FUK-207ENST00000571514 3054 ntTSL 2 BASIC19.65■□□□□ 0.74
LIG1P18858 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC19.65■□□□□ 0.74
LIG1P18858 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
LIG1P18858 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LIG1P18858 FRMD8P1-201ENST00000440433 1524 ntBASIC19.65■□□□□ 0.74
LIG1P18858 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
LIG1P18858 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC19.65■□□□□ 0.74
LIG1P18858 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
LIG1P18858 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC19.64■□□□□ 0.74
LIG1P18858 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
LIG1P18858 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
LIG1P18858 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
LIG1P18858 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LIG1P18858 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC19.64■□□□□ 0.73
LIG1P18858 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LIG1P18858 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC19.64■□□□□ 0.73
LIG1P18858 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
LIG1P18858 TSPY19P-201ENST00000418461 509 ntBASIC19.64■□□□□ 0.73
LIG1P18858 TSPY18P-201ENST00000441642 509 ntBASIC19.64■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 53.3 ms