Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL4A1P02462 AL035252.4-201ENST00000624174 288 ntBASIC20.61■□□□□ 0.89
COL4A1P02462 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL4A1P02462 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC20.6■□□□□ 0.89
COL4A1P02462 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
COL4A1P02462 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL4A1P02462 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL4A1P02462 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL4A1P02462 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
COL4A1P02462 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
COL4A1P02462 AC092068.3-201ENST00000587894 2016 ntBASIC20.6■□□□□ 0.89
COL4A1P02462 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
COL4A1P02462 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL4A1P02462 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC20.6■□□□□ 0.89
COL4A1P02462 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC20.6■□□□□ 0.89
COL4A1P02462 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC20.6■□□□□ 0.89
COL4A1P02462 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
COL4A1P02462 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC20.6■□□□□ 0.89
COL4A1P02462 BASP1P1-201ENST00000430708 665 ntBASIC20.6■□□□□ 0.89
COL4A1P02462 FAM207CP-201ENST00000443486 507 ntBASIC20.6■□□□□ 0.89
COL4A1P02462 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC20.6■□□□□ 0.89
COL4A1P02462 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC20.6■□□□□ 0.89
COL4A1P02462 AC012645.4-201ENST00000610691 1061 ntBASIC20.6■□□□□ 0.89
COL4A1P02462 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
COL4A1P02462 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL4A1P02462 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
COL4A1P02462 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL4A1P02462 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC20.59■□□□□ 0.89
COL4A1P02462 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL4A1P02462 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
COL4A1P02462 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
COL4A1P02462 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC20.59■□□□□ 0.89
COL4A1P02462 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC20.59■□□□□ 0.89
COL4A1P02462 CRB3P1-201ENST00000449338 276 ntBASIC20.59■□□□□ 0.89
COL4A1P02462 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC20.59■□□□□ 0.89
COL4A1P02462 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
COL4A1P02462 INGX-202ENST00000489074 768 ntBASIC20.59■□□□□ 0.89
COL4A1P02462 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL4A1P02462 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC20.59■□□□□ 0.89
COL4A1P02462 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
COL4A1P02462 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC20.59■□□□□ 0.89
COL4A1P02462 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
COL4A1P02462 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL4A1P02462 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL4A1P02462 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC20.59■□□□□ 0.89
COL4A1P02462 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
COL4A1P02462 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
COL4A1P02462 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
COL4A1P02462 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
COL4A1P02462 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
COL4A1P02462 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC20.58■□□□□ 0.89
COL4A1P02462 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
COL4A1P02462 RNA5SP421-201ENST00000516864 134 ntBASIC20.58■□□□□ 0.89
COL4A1P02462 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC20.58■□□□□ 0.89
COL4A1P02462 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC20.58■□□□□ 0.89
COL4A1P02462 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
COL4A1P02462 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC20.58■□□□□ 0.89
COL4A1P02462 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC20.58■□□□□ 0.89
COL4A1P02462 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
COL4A1P02462 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC20.58■□□□□ 0.89
COL4A1P02462 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC20.58■□□□□ 0.89
COL4A1P02462 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
COL4A1P02462 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
COL4A1P02462 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC20.58■□□□□ 0.88
COL4A1P02462 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
COL4A1P02462 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
COL4A1P02462 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
COL4A1P02462 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
COL4A1P02462 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
COL4A1P02462 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
COL4A1P02462 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
COL4A1P02462 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC20.58■□□□□ 0.88
COL4A1P02462 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
COL4A1P02462 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.88
COL4A1P02462 MEIS3P1-201ENST00000495167 958 ntBASIC20.58■□□□□ 0.88
COL4A1P02462 PRYP6-201ENST00000514804 343 ntBASIC20.58■□□□□ 0.88
COL4A1P02462 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC20.58■□□□□ 0.88
COL4A1P02462 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.88
COL4A1P02462 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
COL4A1P02462 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC20.58■□□□□ 0.88
COL4A1P02462 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC20.58■□□□□ 0.88
COL4A1P02462 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
COL4A1P02462 AL590560.3-201ENST00000623350 461 ntBASIC20.58■□□□□ 0.88
COL4A1P02462 AC004840.1-201ENST00000636359 365 ntBASIC20.58■□□□□ 0.88
COL4A1P02462 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL4A1P02462 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL4A1P02462 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
COL4A1P02462 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC20.57■□□□□ 0.88
COL4A1P02462 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
COL4A1P02462 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
COL4A1P02462 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
COL4A1P02462 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL4A1P02462 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL4A1P02462 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
COL4A1P02462 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC20.57■□□□□ 0.88
COL4A1P02462 AC124947.2-201ENST00000547118 1133 ntBASIC20.57■□□□□ 0.88
COL4A1P02462 AL844908.2-201ENST00000609461 460 ntBASIC20.57■□□□□ 0.88
COL4A1P02462 AC007967.4-201ENST00000614700 386 ntBASIC20.57■□□□□ 0.88
COL4A1P02462 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
COL4A1P02462 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC20.57■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms