Protein–RNA interactions for Protein: O95628

CNOT4, CCR4-NOT transcription complex subunit 4, humanhuman

Known RBP Predictions only

Length 575 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4O95628 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CNOT4O95628 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CNOT4O95628 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
CNOT4O95628 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CNOT4O95628 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CNOT4O95628 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC15.19■□□□□ 0.02
CNOT4O95628 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC15.19■□□□□ 0.02
CNOT4O95628 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
CNOT4O95628 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC15.19■□□□□ 0.02
CNOT4O95628 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CNOT4O95628 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC15.18■□□□□ 0.02
CNOT4O95628 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC15.18■□□□□ 0.02
CNOT4O95628 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
CNOT4O95628 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CNOT4O95628 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CNOT4O95628 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC15.18■□□□□ 0.02
CNOT4O95628 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CNOT4O95628 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CNOT4O95628 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
CNOT4O95628 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CNOT4O95628 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC15.18■□□□□ 0.02
CNOT4O95628 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
CNOT4O95628 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC15.18■□□□□ 0.02
CNOT4O95628 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
CNOT4O95628 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC15.18■□□□□ 0.02
CNOT4O95628 UPF3AP3-201ENST00000420996 769 ntBASIC15.18■□□□□ 0.02
CNOT4O95628 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
CNOT4O95628 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
CNOT4O95628 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC15.18■□□□□ 0.02
CNOT4O95628 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC15.18■□□□□ 0.02
CNOT4O95628 TCAP-202ENST00000578283 583 ntTSL 5 BASIC15.18■□□□□ 0.02
CNOT4O95628 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
CNOT4O95628 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC15.18■□□□□ 0.02
CNOT4O95628 AC140113.2-201ENST00000604370 208 ntBASIC15.18■□□□□ 0.02
CNOT4O95628 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC15.18■□□□□ 0.02
CNOT4O95628 AC055717.3-201ENST00000622967 595 ntBASIC15.18■□□□□ 0.02
CNOT4O95628 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC15.18■□□□□ 0.02
CNOT4O95628 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC15.18■□□□□ 0.02
CNOT4O95628 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
CNOT4O95628 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC15.18■□□□□ 0.02
CNOT4O95628 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC15.18■□□□□ 0.02
CNOT4O95628 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CNOT4O95628 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC15.18■□□□□ 0.02
CNOT4O95628 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CNOT4O95628 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CNOT4O95628 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CNOT4O95628 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CNOT4O95628 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
CNOT4O95628 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CNOT4O95628 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CNOT4O95628 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CNOT4O95628 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CNOT4O95628 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CNOT4O95628 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
CNOT4O95628 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC15.17■□□□□ 0.02
CNOT4O95628 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CNOT4O95628 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
CNOT4O95628 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC15.17■□□□□ 0.02
CNOT4O95628 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC15.17■□□□□ 0.02
CNOT4O95628 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
CNOT4O95628 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CNOT4O95628 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC15.17■□□□□ 0.02
CNOT4O95628 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CNOT4O95628 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CNOT4O95628 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CNOT4O95628 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
CNOT4O95628 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC15.17■□□□□ 0.02
CNOT4O95628 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
CNOT4O95628 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC15.17■□□□□ 0.02
CNOT4O95628 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
CNOT4O95628 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
CNOT4O95628 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
CNOT4O95628 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC15.17■□□□□ 0.02
CNOT4O95628 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
CNOT4O95628 LBH-204ENST00000406087 559 ntTSL 4 BASIC15.17■□□□□ 0.02
CNOT4O95628 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC15.17■□□□□ 0.02
CNOT4O95628 AC009947.1-201ENST00000444350 727 ntBASIC15.17■□□□□ 0.02
CNOT4O95628 AC108751.1-201ENST00000490852 363 ntBASIC15.17■□□□□ 0.02
CNOT4O95628 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC15.17■□□□□ 0.02
CNOT4O95628 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC15.17■□□□□ 0.02
CNOT4O95628 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC15.17■□□□□ 0.02
CNOT4O95628 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC15.17■□□□□ 0.02
CNOT4O95628 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC15.17■□□□□ 0.02
CNOT4O95628 AC034105.1-201ENST00000563488 319 ntBASIC15.17■□□□□ 0.02
CNOT4O95628 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC15.17■□□□□ 0.02
CNOT4O95628 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC15.17■□□□□ 0.02
CNOT4O95628 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
CNOT4O95628 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC15.17■□□□□ 0.02
CNOT4O95628 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
CNOT4O95628 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CNOT4O95628 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CNOT4O95628 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC15.17■□□□□ 0.02
CNOT4O95628 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CNOT4O95628 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CNOT4O95628 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
CNOT4O95628 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CNOT4O95628 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
CNOT4O95628 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
CNOT4O95628 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CNOT4O95628 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 85.1 ms