Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SIX3O95343 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SIX3O95343 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SIX3O95343 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SIX3O95343 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SIX3O95343 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
SIX3O95343 SIGLEC16-201ENST00000599858 1437 ntBASIC16.7■□□□□ 0.26
SIX3O95343 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC16.7■□□□□ 0.26
SIX3O95343 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
SIX3O95343 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SIX3O95343 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SIX3O95343 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
SIX3O95343 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC16.69■□□□□ 0.26
SIX3O95343 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC16.69■□□□□ 0.26
SIX3O95343 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SIX3O95343 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
SIX3O95343 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC16.69■□□□□ 0.26
SIX3O95343 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC16.69■□□□□ 0.26
SIX3O95343 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
SIX3O95343 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC16.69■□□□□ 0.26
SIX3O95343 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SIX3O95343 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC16.69■□□□□ 0.26
SIX3O95343 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
SIX3O95343 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC16.69■□□□□ 0.26
SIX3O95343 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SIX3O95343 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
SIX3O95343 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
SIX3O95343 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
SIX3O95343 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC16.69■□□□□ 0.26
SIX3O95343 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC16.69■□□□□ 0.26
SIX3O95343 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
SIX3O95343 AC138894.3-201ENST00000603787 634 ntBASIC16.69■□□□□ 0.26
SIX3O95343 AC093458.2-201ENST00000623150 629 ntBASIC16.69■□□□□ 0.26
SIX3O95343 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SIX3O95343 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SIX3O95343 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC16.69■□□□□ 0.26
SIX3O95343 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
SIX3O95343 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC16.69■□□□□ 0.26
SIX3O95343 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
SIX3O95343 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC16.69■□□□□ 0.26
SIX3O95343 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SIX3O95343 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
SIX3O95343 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
SIX3O95343 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SIX3O95343 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC16.68■□□□□ 0.26
SIX3O95343 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SIX3O95343 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SIX3O95343 CROCCP1-201ENST00000426910 5675 ntBASIC16.68■□□□□ 0.26
SIX3O95343 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
SIX3O95343 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC16.68■□□□□ 0.26
SIX3O95343 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SIX3O95343 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC16.68■□□□□ 0.26
SIX3O95343 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SIX3O95343 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SIX3O95343 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SIX3O95343 AC079776.2-201ENST00000641154 1609 ntBASIC16.68■□□□□ 0.26
SIX3O95343 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SIX3O95343 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
SIX3O95343 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SIX3O95343 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SIX3O95343 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SIX3O95343 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SIX3O95343 TLE1-202ENST00000376484 666 ntTSL 3 BASIC16.68■□□□□ 0.26
SIX3O95343 LINC00982-205ENST00000420957 435 ntBASIC16.68■□□□□ 0.26
SIX3O95343 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SIX3O95343 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC16.68■□□□□ 0.26
SIX3O95343 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SIX3O95343 FICD-205ENST00000552758 603 ntTSL 2 BASIC16.68■□□□□ 0.26
SIX3O95343 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC16.68■□□□□ 0.26
SIX3O95343 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SIX3O95343 AC091076.1-201ENST00000610741 619 ntBASIC16.68■□□□□ 0.26
SIX3O95343 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC16.68■□□□□ 0.26
SIX3O95343 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SIX3O95343 AC073592.4-201ENST00000623827 446 ntBASIC16.68■□□□□ 0.26
SIX3O95343 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
SIX3O95343 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC16.68■□□□□ 0.26
SIX3O95343 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SIX3O95343 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SIX3O95343 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
SIX3O95343 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SIX3O95343 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
SIX3O95343 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
SIX3O95343 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
SIX3O95343 HNRNPRP1-201ENST00000453465 1695 ntBASIC16.68■□□□□ 0.26
SIX3O95343 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SIX3O95343 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
SIX3O95343 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC16.68■□□□□ 0.26
SIX3O95343 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SIX3O95343 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC16.68■□□□□ 0.26
SIX3O95343 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SIX3O95343 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SIX3O95343 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SIX3O95343 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SIX3O95343 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SIX3O95343 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
SIX3O95343 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
SIX3O95343 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SIX3O95343 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
SIX3O95343 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC16.67■□□□□ 0.26
SIX3O95343 DOC2GP-204ENST00000639052 2548 ntBASIC16.67■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms