Protein–RNA interactions for Protein: O75487

GPC4, Glypican-4, humanhuman

Predictions only

Length 556 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GPC4O75487 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC17.14■□□□□ 0.33
GPC4O75487 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC17.14■□□□□ 0.33
GPC4O75487 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
GPC4O75487 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
GPC4O75487 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC17.14■□□□□ 0.33
GPC4O75487 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
GPC4O75487 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC17.14■□□□□ 0.33
GPC4O75487 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
GPC4O75487 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
GPC4O75487 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
GPC4O75487 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
GPC4O75487 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
GPC4O75487 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC17.13■□□□□ 0.33
GPC4O75487 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
GPC4O75487 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC17.13■□□□□ 0.33
GPC4O75487 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC17.13■□□□□ 0.33
GPC4O75487 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
GPC4O75487 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
GPC4O75487 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
GPC4O75487 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
GPC4O75487 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
GPC4O75487 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
GPC4O75487 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC17.13■□□□□ 0.33
GPC4O75487 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC17.13■□□□□ 0.33
GPC4O75487 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
GPC4O75487 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
GPC4O75487 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC17.13■□□□□ 0.33
GPC4O75487 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
GPC4O75487 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
GPC4O75487 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
GPC4O75487 DFFB-203ENST00000341385 572 ntTSL 5 BASIC17.13■□□□□ 0.33
GPC4O75487 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
GPC4O75487 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
GPC4O75487 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
GPC4O75487 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC17.13■□□□□ 0.33
GPC4O75487 NKTR-203ENST00000442970 646 ntTSL 2 BASIC17.13■□□□□ 0.33
GPC4O75487 STK19B-204ENST00000512515 211 ntBASIC17.13■□□□□ 0.33
GPC4O75487 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC17.13■□□□□ 0.33
GPC4O75487 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
GPC4O75487 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
GPC4O75487 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
GPC4O75487 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC17.13■□□□□ 0.33
GPC4O75487 AC073592.4-201ENST00000623827 446 ntBASIC17.13■□□□□ 0.33
GPC4O75487 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC17.13■□□□□ 0.33
GPC4O75487 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
GPC4O75487 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
GPC4O75487 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
GPC4O75487 AC009336.1-201ENST00000608941 1553 ntBASIC17.13■□□□□ 0.33
GPC4O75487 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
GPC4O75487 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
GPC4O75487 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
GPC4O75487 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC17.13■□□□□ 0.33
GPC4O75487 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
GPC4O75487 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
GPC4O75487 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC17.13■□□□□ 0.33
GPC4O75487 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
GPC4O75487 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC17.13■□□□□ 0.33
GPC4O75487 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
GPC4O75487 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
GPC4O75487 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
GPC4O75487 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC17.13■□□□□ 0.33
GPC4O75487 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC17.13■□□□□ 0.33
GPC4O75487 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
GPC4O75487 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
GPC4O75487 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
GPC4O75487 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
GPC4O75487 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
GPC4O75487 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
GPC4O75487 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
GPC4O75487 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC17.12■□□□□ 0.33
GPC4O75487 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
GPC4O75487 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
GPC4O75487 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
GPC4O75487 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
GPC4O75487 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
GPC4O75487 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
GPC4O75487 TLE1-202ENST00000376484 666 ntTSL 3 BASIC17.12■□□□□ 0.33
GPC4O75487 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC17.12■□□□□ 0.33
GPC4O75487 KLF4P1-201ENST00000412782 1185 ntBASIC17.12■□□□□ 0.33
GPC4O75487 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
GPC4O75487 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
GPC4O75487 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
GPC4O75487 TOLLIP-AS1-201ENST00000530897 939 ntBASIC17.12■□□□□ 0.33
GPC4O75487 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
GPC4O75487 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
GPC4O75487 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
GPC4O75487 REXO1L6P-202ENST00000619970 1078 ntBASIC17.12■□□□□ 0.33
GPC4O75487 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
GPC4O75487 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
GPC4O75487 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC17.12■□□□□ 0.33
GPC4O75487 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC17.12■□□□□ 0.33
GPC4O75487 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC17.12■□□□□ 0.33
GPC4O75487 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
GPC4O75487 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC17.12■□□□□ 0.33
GPC4O75487 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
GPC4O75487 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
GPC4O75487 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC17.12■□□□□ 0.33
GPC4O75487 AL139384.1-201ENST00000612143 3047 ntBASIC17.12■□□□□ 0.33
GPC4O75487 AC046185.3-201ENST00000623228 1824 ntBASIC17.12■□□□□ 0.33
GPC4O75487 SIGLEC16-201ENST00000599858 1437 ntBASIC17.12■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms