Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC17.08■□□□□ 0.32
SHOX2O60902 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
SHOX2O60902 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SHOX2O60902 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
SHOX2O60902 AC006449.6-201ENST00000612330 2296 ntBASIC17.08■□□□□ 0.32
SHOX2O60902 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
SHOX2O60902 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SHOX2O60902 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
SHOX2O60902 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
SHOX2O60902 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SHOX2O60902 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SHOX2O60902 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
SHOX2O60902 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SHOX2O60902 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC17.07■□□□□ 0.32
SHOX2O60902 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SHOX2O60902 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
SHOX2O60902 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC17.07■□□□□ 0.32
SHOX2O60902 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SHOX2O60902 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
SHOX2O60902 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC17.07■□□□□ 0.32
SHOX2O60902 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC17.07■□□□□ 0.32
SHOX2O60902 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SHOX2O60902 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SHOX2O60902 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC17.07■□□□□ 0.32
SHOX2O60902 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SHOX2O60902 ACE-203ENST00000413513 2237 ntTSL 2 BASIC17.07■□□□□ 0.32
SHOX2O60902 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SHOX2O60902 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
SHOX2O60902 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC17.07■□□□□ 0.32
SHOX2O60902 FAM197Y1-201ENST00000421178 764 ntBASIC17.07■□□□□ 0.32
SHOX2O60902 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SHOX2O60902 AC112698.1-201ENST00000510299 916 ntBASIC17.07■□□□□ 0.32
SHOX2O60902 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC17.07■□□□□ 0.32
SHOX2O60902 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC17.07■□□□□ 0.32
SHOX2O60902 RNF121-214ENST00000533380 870 ntTSL 3 BASIC17.07■□□□□ 0.32
SHOX2O60902 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SHOX2O60902 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC17.07■□□□□ 0.32
SHOX2O60902 AC073195.1-201ENST00000607241 877 ntBASIC17.07■□□□□ 0.32
SHOX2O60902 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
SHOX2O60902 TPO-203ENST00000346956 2923 ntTSL 5 BASIC17.07■□□□□ 0.32
SHOX2O60902 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC17.07■□□□□ 0.32
SHOX2O60902 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
SHOX2O60902 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC17.07■□□□□ 0.32
SHOX2O60902 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SHOX2O60902 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
SHOX2O60902 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
SHOX2O60902 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SHOX2O60902 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SHOX2O60902 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SHOX2O60902 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC17.07■□□□□ 0.32
SHOX2O60902 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC17.07■□□□□ 0.32
SHOX2O60902 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
SHOX2O60902 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
SHOX2O60902 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
SHOX2O60902 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC17.07■□□□□ 0.32
SHOX2O60902 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
SHOX2O60902 AC005089.1-201ENST00000619486 2241 ntBASIC17.06■□□□□ 0.32
SHOX2O60902 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
SHOX2O60902 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SHOX2O60902 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SHOX2O60902 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
SHOX2O60902 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC17.06■□□□□ 0.32
SHOX2O60902 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
SHOX2O60902 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC17.06■□□□□ 0.32
SHOX2O60902 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SHOX2O60902 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC17.06■□□□□ 0.32
SHOX2O60902 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
SHOX2O60902 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SHOX2O60902 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SHOX2O60902 AC007292.2-201ENST00000593524 1812 ntBASIC17.06■□□□□ 0.32
SHOX2O60902 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SHOX2O60902 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SHOX2O60902 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC17.06■□□□□ 0.32
SHOX2O60902 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
SHOX2O60902 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC17.06■□□□□ 0.32
SHOX2O60902 CD99P1-205ENST00000527459 561 ntBASIC17.06■□□□□ 0.32
SHOX2O60902 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC17.06■□□□□ 0.32
SHOX2O60902 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
SHOX2O60902 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC17.06■□□□□ 0.32
SHOX2O60902 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SHOX2O60902 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC17.06■□□□□ 0.32
SHOX2O60902 MMD2-204ENST00000612910 778 ntTSL 5 BASIC17.06■□□□□ 0.32
SHOX2O60902 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SHOX2O60902 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
SHOX2O60902 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SHOX2O60902 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SHOX2O60902 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SHOX2O60902 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
SHOX2O60902 GRK6P1-201ENST00000400595 1711 ntBASIC17.06■□□□□ 0.32
SHOX2O60902 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SHOX2O60902 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SHOX2O60902 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SHOX2O60902 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SHOX2O60902 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC17.06■□□□□ 0.32
SHOX2O60902 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC17.06■□□□□ 0.32
SHOX2O60902 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC17.06■□□□□ 0.32
SHOX2O60902 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
SHOX2O60902 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC17.06■□□□□ 0.32
SHOX2O60902 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SHOX2O60902 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms