Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 AC092364.2-202ENST00000597012 1073 ntBASIC17.49■□□□□ 0.39
TDP1Q9NUW8 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC17.49■□□□□ 0.39
TDP1Q9NUW8 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC17.49■□□□□ 0.39
TDP1Q9NUW8 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
TDP1Q9NUW8 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
TDP1Q9NUW8 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
TDP1Q9NUW8 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC17.49■□□□□ 0.39
TDP1Q9NUW8 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TDP1Q9NUW8 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC17.49■□□□□ 0.39
TDP1Q9NUW8 AC007613.1-201ENST00000572811 2597 ntBASIC17.49■□□□□ 0.39
TDP1Q9NUW8 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TDP1Q9NUW8 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC17.49■□□□□ 0.39
TDP1Q9NUW8 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TDP1Q9NUW8 FOS-208ENST00000555686 1496 ntTSL 2 BASIC17.49■□□□□ 0.39
TDP1Q9NUW8 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TDP1Q9NUW8 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC17.49■□□□□ 0.39
TDP1Q9NUW8 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TDP1Q9NUW8 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC17.48■□□□□ 0.39
TDP1Q9NUW8 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TDP1Q9NUW8 AC116353.5-201ENST00000638148 1699 ntBASIC17.48■□□□□ 0.39
TDP1Q9NUW8 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
TDP1Q9NUW8 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TDP1Q9NUW8 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
TDP1Q9NUW8 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TDP1Q9NUW8 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC17.48■□□□□ 0.39
TDP1Q9NUW8 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TDP1Q9NUW8 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TDP1Q9NUW8 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
TDP1Q9NUW8 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
TDP1Q9NUW8 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
TDP1Q9NUW8 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
TDP1Q9NUW8 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
TDP1Q9NUW8 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
TDP1Q9NUW8 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC17.48■□□□□ 0.39
TDP1Q9NUW8 FAM8A3P-201ENST00000427218 844 ntBASIC17.48■□□□□ 0.39
TDP1Q9NUW8 FAM58DP-201ENST00000428076 619 ntBASIC17.48■□□□□ 0.39
TDP1Q9NUW8 SPCS2P4-201ENST00000436160 681 ntBASIC17.48■□□□□ 0.39
TDP1Q9NUW8 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC17.48■□□□□ 0.39
TDP1Q9NUW8 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
TDP1Q9NUW8 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
TDP1Q9NUW8 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
TDP1Q9NUW8 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
TDP1Q9NUW8 AC087641.1-201ENST00000557561 1021 ntBASIC17.48■□□□□ 0.39
TDP1Q9NUW8 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
TDP1Q9NUW8 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
TDP1Q9NUW8 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
TDP1Q9NUW8 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
TDP1Q9NUW8 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC17.48■□□□□ 0.39
TDP1Q9NUW8 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
TDP1Q9NUW8 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC17.48■□□□□ 0.39
TDP1Q9NUW8 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
TDP1Q9NUW8 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC17.48■□□□□ 0.39
TDP1Q9NUW8 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC17.48■□□□□ 0.39
TDP1Q9NUW8 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TDP1Q9NUW8 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC17.48■□□□□ 0.39
TDP1Q9NUW8 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC17.48■□□□□ 0.39
TDP1Q9NUW8 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TDP1Q9NUW8 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TDP1Q9NUW8 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
TDP1Q9NUW8 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC17.48■□□□□ 0.39
TDP1Q9NUW8 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
TDP1Q9NUW8 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
TDP1Q9NUW8 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
TDP1Q9NUW8 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TDP1Q9NUW8 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC17.47■□□□□ 0.39
TDP1Q9NUW8 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
TDP1Q9NUW8 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
TDP1Q9NUW8 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TDP1Q9NUW8 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
TDP1Q9NUW8 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TDP1Q9NUW8 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC17.47■□□□□ 0.39
TDP1Q9NUW8 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
TDP1Q9NUW8 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
TDP1Q9NUW8 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC17.47■□□□□ 0.39
TDP1Q9NUW8 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
TDP1Q9NUW8 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC17.47■□□□□ 0.39
TDP1Q9NUW8 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
TDP1Q9NUW8 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TDP1Q9NUW8 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
TDP1Q9NUW8 CD99-202ENST00000381180 530 ntTSL 2 BASIC17.47■□□□□ 0.39
TDP1Q9NUW8 RNU1-129P-201ENST00000384064 167 ntBASIC17.47■□□□□ 0.39
TDP1Q9NUW8 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC17.47■□□□□ 0.39
TDP1Q9NUW8 AC067863.1-201ENST00000494933 530 ntBASIC17.47■□□□□ 0.39
TDP1Q9NUW8 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC17.47■□□□□ 0.39
TDP1Q9NUW8 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TDP1Q9NUW8 IGHV3-62-201ENST00000520057 340 ntBASIC17.47■□□□□ 0.39
TDP1Q9NUW8 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC17.47■□□□□ 0.39
TDP1Q9NUW8 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC17.47■□□□□ 0.39
TDP1Q9NUW8 U1.21-201ENST00000580816 167 ntBASIC17.47■□□□□ 0.39
TDP1Q9NUW8 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
TDP1Q9NUW8 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC17.47■□□□□ 0.39
TDP1Q9NUW8 Z92544.3-201ENST00000624747 417 ntBASIC17.47■□□□□ 0.39
TDP1Q9NUW8 AP001350.2-201ENST00000625104 1094 ntBASIC17.47■□□□□ 0.39
TDP1Q9NUW8 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
TDP1Q9NUW8 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TDP1Q9NUW8 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
TDP1Q9NUW8 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
TDP1Q9NUW8 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TDP1Q9NUW8 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
TDP1Q9NUW8 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms