Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC18.39■□□□□ 0.53
LRCH3Q96II8 ARL16-210ENST00000574938 751 ntTSL 2 BASIC18.39■□□□□ 0.53
LRCH3Q96II8 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC18.39■□□□□ 0.53
LRCH3Q96II8 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC18.39■□□□□ 0.53
LRCH3Q96II8 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
LRCH3Q96II8 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC18.39■□□□□ 0.53
LRCH3Q96II8 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC18.39■□□□□ 0.53
LRCH3Q96II8 AC129492.6-201ENST00000611383 1305 ntBASIC18.39■□□□□ 0.53
LRCH3Q96II8 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
LRCH3Q96II8 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
LRCH3Q96II8 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
LRCH3Q96II8 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC18.39■□□□□ 0.53
LRCH3Q96II8 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
LRCH3Q96II8 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
LRCH3Q96II8 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC18.39■□□□□ 0.53
LRCH3Q96II8 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
LRCH3Q96II8 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
LRCH3Q96II8 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
LRCH3Q96II8 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
LRCH3Q96II8 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LRCH3Q96II8 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC18.38■□□□□ 0.53
LRCH3Q96II8 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC18.38■□□□□ 0.53
LRCH3Q96II8 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
LRCH3Q96II8 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LRCH3Q96II8 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LRCH3Q96II8 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC18.38■□□□□ 0.53
LRCH3Q96II8 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LRCH3Q96II8 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
LRCH3Q96II8 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
LRCH3Q96II8 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LRCH3Q96II8 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
LRCH3Q96II8 TTTY23B-201ENST00000442790 549 ntBASIC18.38■□□□□ 0.53
LRCH3Q96II8 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC18.38■□□□□ 0.53
LRCH3Q96II8 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC18.38■□□□□ 0.53
LRCH3Q96II8 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC18.38■□□□□ 0.53
LRCH3Q96II8 AP000842.3-202ENST00000569238 1080 ntBASIC18.38■□□□□ 0.53
LRCH3Q96II8 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LRCH3Q96II8 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC18.38■□□□□ 0.53
LRCH3Q96II8 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC18.38■□□□□ 0.53
LRCH3Q96II8 RNA5-8SN1-201ENST00000610460 153 ntBASIC18.38■□□□□ 0.53
LRCH3Q96II8 RNA5-8SN5-202ENST00000612463 153 ntBASIC18.38■□□□□ 0.53
LRCH3Q96II8 RNA5-8SN4-201ENST00000613359 153 ntBASIC18.38■□□□□ 0.53
LRCH3Q96II8 RNA5-8SN5-201ENST00000619471 153 ntBASIC18.38■□□□□ 0.53
LRCH3Q96II8 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC18.38■□□□□ 0.53
LRCH3Q96II8 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LRCH3Q96II8 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
LRCH3Q96II8 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LRCH3Q96II8 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LRCH3Q96II8 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
LRCH3Q96II8 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC18.38■□□□□ 0.53
LRCH3Q96II8 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
LRCH3Q96II8 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC18.38■□□□□ 0.53
LRCH3Q96II8 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC18.38■□□□□ 0.53
LRCH3Q96II8 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LRCH3Q96II8 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
LRCH3Q96II8 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
LRCH3Q96II8 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LRCH3Q96II8 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
LRCH3Q96II8 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC18.37■□□□□ 0.53
LRCH3Q96II8 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LRCH3Q96II8 AC100803.2-201ENST00000562459 1963 ntBASIC18.37■□□□□ 0.53
LRCH3Q96II8 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
LRCH3Q96II8 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
LRCH3Q96II8 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LRCH3Q96II8 MYCLP1-201ENST00000372451 1075 ntBASIC18.37■□□□□ 0.53
LRCH3Q96II8 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
LRCH3Q96II8 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LRCH3Q96II8 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC18.37■□□□□ 0.53
LRCH3Q96II8 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
LRCH3Q96II8 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC18.37■□□□□ 0.53
LRCH3Q96II8 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
LRCH3Q96II8 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC18.37■□□□□ 0.53
LRCH3Q96II8 AC234783.1-201ENST00000441761 496 ntBASIC18.37■□□□□ 0.53
LRCH3Q96II8 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC18.37■□□□□ 0.53
LRCH3Q96II8 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LRCH3Q96II8 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
LRCH3Q96II8 RN7SL837P-201ENST00000463010 287 ntBASIC18.37■□□□□ 0.53
LRCH3Q96II8 GLI4-203ENST00000517468 963 ntTSL 5 BASIC18.37■□□□□ 0.53
LRCH3Q96II8 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC18.37■□□□□ 0.53
LRCH3Q96II8 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
LRCH3Q96II8 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC18.37■□□□□ 0.53
LRCH3Q96II8 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC18.37■□□□□ 0.53
LRCH3Q96II8 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC18.37■□□□□ 0.53
LRCH3Q96II8 RN7SL190P-201ENST00000582519 257 ntBASIC18.37■□□□□ 0.53
LRCH3Q96II8 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC18.37■□□□□ 0.53
LRCH3Q96II8 CHCHD2P3-201ENST00000603038 451 ntBASIC18.37■□□□□ 0.53
LRCH3Q96II8 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
LRCH3Q96II8 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
LRCH3Q96II8 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
LRCH3Q96II8 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
LRCH3Q96II8 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LRCH3Q96II8 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC18.37■□□□□ 0.53
LRCH3Q96II8 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
LRCH3Q96II8 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
LRCH3Q96II8 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC18.37■□□□□ 0.53
LRCH3Q96II8 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
LRCH3Q96II8 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LRCH3Q96II8 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
LRCH3Q96II8 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
LRCH3Q96II8 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms