Protein–RNA interactions for Protein: Q93096

PTP4A1, Protein tyrosine phosphatase type IVA 1, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A1Q93096 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC15.38■□□□□ 0.05
PTP4A1Q93096 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
PTP4A1Q93096 AC026691.1-201ENST00000602502 2017 ntBASIC15.38■□□□□ 0.05
PTP4A1Q93096 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
PTP4A1Q93096 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
PTP4A1Q93096 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
PTP4A1Q93096 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
PTP4A1Q93096 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
PTP4A1Q93096 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC15.37■□□□□ 0.05
PTP4A1Q93096 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
PTP4A1Q93096 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
PTP4A1Q93096 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
PTP4A1Q93096 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
PTP4A1Q93096 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC15.37■□□□□ 0.05
PTP4A1Q93096 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
PTP4A1Q93096 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
PTP4A1Q93096 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
PTP4A1Q93096 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC15.37■□□□□ 0.05
PTP4A1Q93096 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
PTP4A1Q93096 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC15.37■□□□□ 0.05
PTP4A1Q93096 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
PTP4A1Q93096 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
PTP4A1Q93096 AC246785.2-201ENST00000432512 513 ntBASIC15.37■□□□□ 0.05
PTP4A1Q93096 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC15.37■□□□□ 0.05
PTP4A1Q93096 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC15.37■□□□□ 0.05
PTP4A1Q93096 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
PTP4A1Q93096 AC011467.2-201ENST00000598425 242 ntBASIC15.37■□□□□ 0.05
PTP4A1Q93096 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
PTP4A1Q93096 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
PTP4A1Q93096 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC15.37■□□□□ 0.05
PTP4A1Q93096 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
PTP4A1Q93096 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC15.37■□□□□ 0.05
PTP4A1Q93096 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
PTP4A1Q93096 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC15.37■□□□□ 0.05
PTP4A1Q93096 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC15.37■□□□□ 0.05
PTP4A1Q93096 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
PTP4A1Q93096 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
PTP4A1Q93096 KRT18P1-202ENST00000452408 1331 ntBASIC15.37■□□□□ 0.05
PTP4A1Q93096 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC15.37■□□□□ 0.05
PTP4A1Q93096 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
PTP4A1Q93096 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
PTP4A1Q93096 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
PTP4A1Q93096 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
PTP4A1Q93096 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC15.36■□□□□ 0.05
PTP4A1Q93096 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC15.36■□□□□ 0.05
PTP4A1Q93096 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC15.36■□□□□ 0.05
PTP4A1Q93096 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
PTP4A1Q93096 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC15.36■□□□□ 0.05
PTP4A1Q93096 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
PTP4A1Q93096 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC15.36■□□□□ 0.05
PTP4A1Q93096 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC15.36■□□□□ 0.05
PTP4A1Q93096 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
PTP4A1Q93096 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC15.36■□□□□ 0.05
PTP4A1Q93096 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
PTP4A1Q93096 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
PTP4A1Q93096 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
PTP4A1Q93096 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
PTP4A1Q93096 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
PTP4A1Q93096 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC15.36■□□□□ 0.05
PTP4A1Q93096 AC003669.1-201ENST00000334569 611 ntBASIC15.36■□□□□ 0.05
PTP4A1Q93096 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC15.36■□□□□ 0.05
PTP4A1Q93096 DANCR-204ENST00000444958 709 ntTSL 3 BASIC15.36■□□□□ 0.05
PTP4A1Q93096 VENTXP7-201ENST00000475503 772 ntBASIC15.36■□□□□ 0.05
PTP4A1Q93096 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC15.36■□□□□ 0.05
PTP4A1Q93096 AC069148.1-201ENST00000608741 768 ntBASIC15.36■□□□□ 0.05
PTP4A1Q93096 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC15.36■□□□□ 0.05
PTP4A1Q93096 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
PTP4A1Q93096 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
PTP4A1Q93096 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC15.36■□□□□ 0.05
PTP4A1Q93096 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
PTP4A1Q93096 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
PTP4A1Q93096 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
PTP4A1Q93096 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC15.36■□□□□ 0.05
PTP4A1Q93096 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC15.36■□□□□ 0.05
PTP4A1Q93096 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
PTP4A1Q93096 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC15.36■□□□□ 0.05
PTP4A1Q93096 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC15.35■□□□□ 0.05
PTP4A1Q93096 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
PTP4A1Q93096 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC15.35■□□□□ 0.05
PTP4A1Q93096 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC15.35■□□□□ 0.05
PTP4A1Q93096 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
PTP4A1Q93096 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PTP4A1Q93096 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
PTP4A1Q93096 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PTP4A1Q93096 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC15.35■□□□□ 0.05
PTP4A1Q93096 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PTP4A1Q93096 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PTP4A1Q93096 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
PTP4A1Q93096 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PTP4A1Q93096 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC15.35■□□□□ 0.05
PTP4A1Q93096 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
PTP4A1Q93096 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC15.35■□□□□ 0.05
PTP4A1Q93096 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC15.35■□□□□ 0.05
PTP4A1Q93096 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC15.35■□□□□ 0.05
PTP4A1Q93096 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
PTP4A1Q93096 AC008741.2-201ENST00000612792 3115 ntBASIC15.35■□□□□ 0.05
PTP4A1Q93096 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PTP4A1Q93096 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PTP4A1Q93096 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC15.35■□□□□ 0.05
PTP4A1Q93096 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms