Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
LMX1AQ8TE12 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
LMX1AQ8TE12 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
LMX1AQ8TE12 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
LMX1AQ8TE12 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC16.57■□□□□ 0.24
LMX1AQ8TE12 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
LMX1AQ8TE12 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
LMX1AQ8TE12 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
LMX1AQ8TE12 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
LMX1AQ8TE12 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
LMX1AQ8TE12 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC16.57■□□□□ 0.24
LMX1AQ8TE12 EGFEM1P-202ENST00000431685 1563 ntBASIC16.57■□□□□ 0.24
LMX1AQ8TE12 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
LMX1AQ8TE12 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC16.57■□□□□ 0.24
LMX1AQ8TE12 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
LMX1AQ8TE12 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
LMX1AQ8TE12 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
LMX1AQ8TE12 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
LMX1AQ8TE12 HNRNPFP1-201ENST00000391730 1133 ntBASIC16.57■□□□□ 0.24
LMX1AQ8TE12 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC16.57■□□□□ 0.24
LMX1AQ8TE12 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC16.57■□□□□ 0.24
LMX1AQ8TE12 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC16.57■□□□□ 0.24
LMX1AQ8TE12 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC16.57■□□□□ 0.24
LMX1AQ8TE12 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC16.57■□□□□ 0.24
LMX1AQ8TE12 AC093512.1-201ENST00000617969 520 ntBASIC16.57■□□□□ 0.24
LMX1AQ8TE12 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
LMX1AQ8TE12 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
LMX1AQ8TE12 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
LMX1AQ8TE12 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
LMX1AQ8TE12 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
LMX1AQ8TE12 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
LMX1AQ8TE12 CD276-203ENST00000537340 2439 ntTSL 2 BASIC16.57■□□□□ 0.24
LMX1AQ8TE12 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC16.57■□□□□ 0.24
LMX1AQ8TE12 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
LMX1AQ8TE12 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
LMX1AQ8TE12 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
LMX1AQ8TE12 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC16.57■□□□□ 0.24
LMX1AQ8TE12 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
LMX1AQ8TE12 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC16.57■□□□□ 0.24
LMX1AQ8TE12 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
LMX1AQ8TE12 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC16.56■□□□□ 0.24
LMX1AQ8TE12 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
LMX1AQ8TE12 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC16.56■□□□□ 0.24
LMX1AQ8TE12 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC16.56■□□□□ 0.24
LMX1AQ8TE12 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LMX1AQ8TE12 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
LMX1AQ8TE12 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
LMX1AQ8TE12 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LMX1AQ8TE12 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
LMX1AQ8TE12 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC16.56■□□□□ 0.24
LMX1AQ8TE12 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
LMX1AQ8TE12 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC16.56■□□□□ 0.24
LMX1AQ8TE12 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC16.56■□□□□ 0.24
LMX1AQ8TE12 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC16.56■□□□□ 0.24
LMX1AQ8TE12 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LMX1AQ8TE12 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC16.56■□□□□ 0.24
LMX1AQ8TE12 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LMX1AQ8TE12 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LMX1AQ8TE12 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
LMX1AQ8TE12 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
LMX1AQ8TE12 WDR53-203ENST00000429115 683 ntTSL 2 BASIC16.56■□□□□ 0.24
LMX1AQ8TE12 RN7SL589P-201ENST00000481268 310 ntBASIC16.56■□□□□ 0.24
LMX1AQ8TE12 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LMX1AQ8TE12 AC079140.1-201ENST00000508039 487 ntBASIC16.56■□□□□ 0.24
LMX1AQ8TE12 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
LMX1AQ8TE12 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC16.56■□□□□ 0.24
LMX1AQ8TE12 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC16.56■□□□□ 0.24
LMX1AQ8TE12 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC16.56■□□□□ 0.24
LMX1AQ8TE12 AC093520.2-201ENST00000561830 333 ntBASIC16.56■□□□□ 0.24
LMX1AQ8TE12 AL135744.1-201ENST00000565098 629 ntBASIC16.56■□□□□ 0.24
LMX1AQ8TE12 RARRES2P8-201ENST00000566335 367 ntBASIC16.56■□□□□ 0.24
LMX1AQ8TE12 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC16.56■□□□□ 0.24
LMX1AQ8TE12 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC16.56■□□□□ 0.24
LMX1AQ8TE12 AC011467.4-201ENST00000594891 528 ntBASIC16.56■□□□□ 0.24
LMX1AQ8TE12 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC16.56■□□□□ 0.24
LMX1AQ8TE12 AL161645.1-201ENST00000622716 1255 ntBASIC16.56■□□□□ 0.24
LMX1AQ8TE12 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC16.56■□□□□ 0.24
LMX1AQ8TE12 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC16.56■□□□□ 0.24
LMX1AQ8TE12 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC16.56■□□□□ 0.24
LMX1AQ8TE12 NEFHP1-201ENST00000412845 2629 ntBASIC16.56■□□□□ 0.24
LMX1AQ8TE12 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
LMX1AQ8TE12 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LMX1AQ8TE12 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC16.56■□□□□ 0.24
LMX1AQ8TE12 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LMX1AQ8TE12 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
LMX1AQ8TE12 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
LMX1AQ8TE12 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
LMX1AQ8TE12 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
LMX1AQ8TE12 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
LMX1AQ8TE12 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC16.55■□□□□ 0.24
LMX1AQ8TE12 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC16.55■□□□□ 0.24
LMX1AQ8TE12 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
LMX1AQ8TE12 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
LMX1AQ8TE12 AL353732.1-201ENST00000569618 1459 ntBASIC16.55■□□□□ 0.24
LMX1AQ8TE12 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
LMX1AQ8TE12 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
LMX1AQ8TE12 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC16.55■□□□□ 0.24
LMX1AQ8TE12 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
LMX1AQ8TE12 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
LMX1AQ8TE12 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms