Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 SNHG7-202ENST00000416970 789 ntTSL 1 (best)28.26■■■□□ 2.112e-6■□□□□ 8
DDX55Q8NHQ9 TRAF4-211ENST00000478021 718 ntTSL 327.76■■■□□ 2.032e-6■□□□□ 8
DDX55Q8NHQ9 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC27.51■■□□□ 1.992e-6■□□□□ 8
DDX55Q8NHQ9 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC27.43■■□□□ 1.982e-6■□□□□ 8
DDX55Q8NHQ9 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC27.11■■□□□ 1.932e-6■□□□□ 8
DDX55Q8NHQ9 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC25.33■■□□□ 1.652e-6■□□□□ 8
DDX55Q8NHQ9 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC25.31■■□□□ 1.642e-6■□□□□ 8
DDX55Q8NHQ9 TCIRG1-216ENST00000534673 848 ntTSL 325.29■■□□□ 1.642e-6■□□□□ 8
DDX55Q8NHQ9 F7-203ENST00000444337 564 ntTSL 524.53■■□□□ 1.522e-6■□□□□ 8
DDX55Q8NHQ9 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC24.24■■□□□ 1.472e-6■□□□□ 8
DDX55Q8NHQ9 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC24.16■■□□□ 1.462e-6■□□□□ 8
DDX55Q8NHQ9 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC23.98■■□□□ 1.432e-6■□□□□ 8
DDX55Q8NHQ9 TCIRG1-206ENST00000527530 529 ntTSL 323.76■■□□□ 1.392e-6■□□□□ 8
DDX55Q8NHQ9 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC23.52■■□□□ 1.362e-6■□□□□ 8
DDX55Q8NHQ9 KAT8-207ENST00000573144 610 ntTSL 223.29■■□□□ 1.322e-6■□□□□ 8
DDX55Q8NHQ9 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC22.9■■□□□ 1.262e-6■□□□□ 8
DDX55Q8NHQ9 TCIRG1-202ENST00000524598 940 ntTSL 522.8■■□□□ 1.242e-6■□□□□ 8
DDX55Q8NHQ9 MLF2-208ENST00000541305 564 ntTSL 222.73■■□□□ 1.232e-6■□□□□ 8
DDX55Q8NHQ9 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC22.73■■□□□ 1.232e-6■□□□□ 8
DDX55Q8NHQ9 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC22.67■■□□□ 1.222e-6■□□□□ 8
DDX55Q8NHQ9 PCSK6-208ENST00000559417 1035 ntTSL 522.59■■□□□ 1.212e-6■□□□□ 8
DDX55Q8NHQ9 FAM234A-208ENST00000421000 739 ntTSL 322.37■■□□□ 1.172e-6■□□□□ 8
DDX55Q8NHQ9 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC22.13■■□□□ 1.132e-6■□□□□ 8
DDX55Q8NHQ9 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC22.09■■□□□ 1.132e-6■□□□□ 8
DDX55Q8NHQ9 ENTPD2-203ENST00000460614 1427 ntTSL 1 (best)22.08■■□□□ 1.132e-6■□□□□ 8
DDX55Q8NHQ9 ACAA1-205ENST00000421218 869 ntTSL 521.5■■□□□ 1.032e-6■□□□□ 8
DDX55Q8NHQ9 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC21.41■■□□□ 1.022e-6■□□□□ 8
DDX55Q8NHQ9 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.962e-6■□□□□ 8
DDX55Q8NHQ9 CTDSP1-203ENST00000431127 586 ntTSL 321.06■□□□□ 0.962e-6■□□□□ 8
DDX55Q8NHQ9 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC20.57■□□□□ 0.882e-6■□□□□ 8
DDX55Q8NHQ9 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.882e-6■□□□□ 8
DDX55Q8NHQ9 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.812e-6■□□□□ 8
DDX55Q8NHQ9 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.82e-6■□□□□ 8
DDX55Q8NHQ9 LAMA5-210ENST00000491036 728 ntTSL 220.04■□□□□ 0.82e-6■□□□□ 8
DDX55Q8NHQ9 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.742e-6■□□□□ 8
DDX55Q8NHQ9 KAT8-203ENST00000537402 1345 ntTSL 1 (best)19.62■□□□□ 0.732e-6■□□□□ 8
DDX55Q8NHQ9 CTDSP1-209ENST00000488627 1118 ntTSL 319.5■□□□□ 0.712e-6■□□□□ 8
DDX55Q8NHQ9 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC19.4■□□□□ 0.72e-6■□□□□ 8
DDX55Q8NHQ9 TCIRG1-208ENST00000529364 868 ntTSL 319.31■□□□□ 0.682e-6■□□□□ 8
DDX55Q8NHQ9 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.672e-6■□□□□ 8
DDX55Q8NHQ9 CTDSP1-202ENST00000428361 842 ntTSL 519.16■□□□□ 0.662e-6■□□□□ 8
DDX55Q8NHQ9 TRIM28-203ENST00000593582 533 ntTSL 318.75■□□□□ 0.592e-6■□□□□ 8
DDX55Q8NHQ9 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.582e-6■□□□□ 8
DDX55Q8NHQ9 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.552e-6■□□□□ 8
DDX55Q8NHQ9 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC18.22■□□□□ 0.512e-6■□□□□ 8
DDX55Q8NHQ9 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC18.14■□□□□ 0.492e-6■□□□□ 8
DDX55Q8NHQ9 ACAA1-216ENST00000480865 1540 ntTSL 518.12■□□□□ 0.492e-6■□□□□ 8
DDX55Q8NHQ9 FAM234A-213ENST00000449945 887 ntTSL 517.9■□□□□ 0.462e-6■□□□□ 8
DDX55Q8NHQ9 FAM234A-209ENST00000424016 646 ntTSL 317.84■□□□□ 0.452e-6■□□□□ 8
DDX55Q8NHQ9 FAM234A-206ENST00000420046 1006 ntTSL 517.46■□□□□ 0.392e-6■□□□□ 8
DDX55Q8NHQ9 FAM234A-214ENST00000453430 984 ntTSL 517.07■□□□□ 0.322e-6■□□□□ 8
DDX55Q8NHQ9 CTDSP1-208ENST00000482272 984 ntTSL 216.67■□□□□ 0.262e-6■□□□□ 8
DDX55Q8NHQ9 CTDSP1-206ENST00000464255 926 ntTSL 516.22■□□□□ 0.192e-6■□□□□ 8
DDX55Q8NHQ9 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.172e-6■□□□□ 8
DDX55Q8NHQ9 GGCX-206ENST00000465637 563 ntTSL 415.79■□□□□ 0.122e-6■□□□□ 8
DDX55Q8NHQ9 GOLIM4-202ENST00000470487 4373 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.052e-6■□□□□ 8
DDX55Q8NHQ9 ACAA1-211ENST00000452171 927 ntTSL 315.25■□□□□ 0.032e-6■□□□□ 8
DDX55Q8NHQ9 FAM234A-207ENST00000420500 459 ntTSL 514.21□□□□□ -0.132e-6■□□□□ 8
DDX55Q8NHQ9 KAT8-204ENST00000538768 2500 ntTSL 1 (best)14.09□□□□□ -0.152e-6■□□□□ 8
DDX55Q8NHQ9 PLEKHB2-202ENST00000403716 4349 ntTSL 3 BASIC14.09□□□□□ -0.152e-6■□□□□ 8
DDX55Q8NHQ9 MID1IP1-204ENST00000614558 3781 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.22e-6■□□□□ 8
DDX55Q8NHQ9 EEF1G-204ENST00000532986 578 ntTSL 413.72□□□□□ -0.212e-22■□□□□ 8
DDX55Q8NHQ9 PCSK6-203ENST00000557794 1196 ntTSL 513.69□□□□□ -0.222e-6■□□□□ 8
DDX55Q8NHQ9 WDR59-208ENST00000563111 583 ntTSL 413.46□□□□□ -0.252e-6■□□□□ 8
DDX55Q8NHQ9 EIF3L-201ENST00000381683 1599 ntTSL 2 BASIC13.22□□□□□ -0.292e-6■□□□□ 8
DDX55Q8NHQ9 ACAA1-214ENST00000469559 4720 ntTSL 213.16□□□□□ -0.32e-6■□□□□ 8
DDX55Q8NHQ9 EEF1G-202ENST00000524420 557 ntTSL 413.14□□□□□ -0.312e-22■□□□□ 8
DDX55Q8NHQ9 TRIM28-210ENST00000597618 609 ntTSL 212.93□□□□□ -0.342e-6■□□□□ 8
DDX55Q8NHQ9 EIF3L-214ENST00000624234 2091 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.362e-6■□□□□ 8
DDX55Q8NHQ9 PLEKHB2-208ENST00000439822 4177 ntTSL 3 BASIC12.67□□□□□ -0.382e-6■□□□□ 8
DDX55Q8NHQ9 LEAP2-203ENST00000485457 457 ntTSL 212.24□□□□□ -0.452e-6■□□□□ 8
DDX55Q8NHQ9 METTL17-203ENST00000553389 952 ntTSL 211.71□□□□□ -0.532e-6■□□□□ 8
DDX55Q8NHQ9 GGCX-205ENST00000430215 2314 ntTSL 2 BASIC11.61□□□□□ -0.552e-6■□□□□ 8
DDX55Q8NHQ9 METTL17-219ENST00000555902 868 ntTSL 311.6□□□□□ -0.552e-6■□□□□ 8
DDX55Q8NHQ9 LEAP2-202ENST00000483190 935 ntTSL 1 (best)11.35□□□□□ -0.592e-6■□□□□ 8
DDX55Q8NHQ9 RAB11FIP5-204ENST00000482554 2810 ntTSL 410.92□□□□□ -0.662e-6■□□□□ 8
DDX55Q8NHQ9 PLEKHB2-201ENST00000234115 4208 ntAPPRIS P3 TSL 1 (best) BASIC10.56□□□□□ -0.722e-6■□□□□ 8
DDX55Q8NHQ9 EIF3L-211ENST00000476955 583 ntTSL 510.48□□□□□ -0.732e-6■□□□□ 8
DDX55Q8NHQ9 PCSK6-202ENST00000398185 3723 ntTSL 1 (best)10.35□□□□□ -0.752e-6■□□□□ 8
DDX55Q8NHQ9 RAB11FIP5-206ENST00000493523 4008 ntTSL 210.31□□□□□ -0.762e-6■□□□□ 8
DDX55Q8NHQ9 SESTD1-203ENST00000428443 10615 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.852e-6■□□□□ 8
DDX55Q8NHQ9 LEAP2-201ENST00000296877 2207 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.862e-6■□□□□ 8
DDX55Q8NHQ9 METTL17-208ENST00000554354 249 ntTSL 59.15□□□□□ -0.942e-6■□□□□ 8
DDX55Q8NHQ9 FBXO11-202ENST00000403359 4055 ntTSL 1 (best) BASIC9.08□□□□□ -0.969e-12■□□□□ 8
DDX55Q8NHQ9 WDR59-218ENST00000569421 478 ntTSL 39.04□□□□□ -0.962e-6■□□□□ 8
DDX55Q8NHQ9 SFXN5-217ENST00000485057 447 ntTSL 59.02□□□□□ -0.972e-6■□□□□ 8
DDX55Q8NHQ9 GGCX-201ENST00000233838 7569 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -12e-6■□□□□ 8
DDX55Q8NHQ9 MALT1-204ENST00000589873 2246 ntTSL 28.19□□□□□ -1.12e-6■□□□□ 8
DDX55Q8NHQ9 EIF3L-206ENST00000439997 787 ntTSL 58.13□□□□□ -1.112e-6■□□□□ 8
DDX55Q8NHQ9 EIF3L-212ENST00000477256 1708 ntTSL 57.91□□□□□ -1.142e-6■□□□□ 8
DDX55Q8NHQ9 EIF3L-203ENST00000412331 3220 ntTSL 1 (best) BASIC7.74□□□□□ -1.172e-6■□□□□ 8
DDX55Q8NHQ9 FAM234A-211ENST00000438220 554 ntTSL 57.68□□□□□ -1.182e-6■□□□□ 8
DDX55Q8NHQ9 EIF3L-204ENST00000414316 581 ntTSL 57.59□□□□□ -1.192e-6■□□□□ 8
DDX55Q8NHQ9 CNOT11-202ENST00000420107 552 ntTSL 27.26□□□□□ -1.252e-6■□□□□ 8
DDX55Q8NHQ9 FBXO11-206ENST00000465204 3158 ntTSL 26.57□□□□□ -1.369e-12■□□□□ 8
DDX55Q8NHQ9 EIF3L-208ENST00000451427 583 ntTSL 46.14□□□□□ -1.432e-6■□□□□ 8
DDX55Q8NHQ9 EIF3L-205ENST00000436452 574 ntTSL 46.08□□□□□ -1.442e-6■□□□□ 8
DDX55Q8NHQ9 FBXO11-205ENST00000434234 572 ntTSL 35.96□□□□□ -1.469e-12■□□□□ 8
DDX55Q8NHQ9 FBXO11-203ENST00000405808 299 ntTSL 5 BASIC5.81□□□□□ -1.489e-12■□□□□ 8
DDX55Q8NHQ9 C8orf4-201ENST00000315792 1854 ntAPPRIS P1 BASIC5.62□□□□□ -1.512e-6■□□□□ 8
Retrieved 100 of 15,504 protein–RNA pairs in 55.1 ms