Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 TUBB8P12-201ENST00000308911 1335 ntBASIC14.94□□□□□ -0.02
CCDC54Q8NEL0 TUBB7P-202ENST00000428444 1305 ntBASIC14.94□□□□□ -0.02
CCDC54Q8NEL0 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC14.94□□□□□ -0.02
CCDC54Q8NEL0 TUBB8P7-204ENST00000567960 1332 ntBASIC14.94□□□□□ -0.02
CCDC54Q8NEL0 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC14.94□□□□□ -0.02
CCDC54Q8NEL0 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC54Q8NEL0 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC54Q8NEL0 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC54Q8NEL0 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC14.94□□□□□ -0.02
CCDC54Q8NEL0 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC14.94□□□□□ -0.02
CCDC54Q8NEL0 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC14.94□□□□□ -0.02
CCDC54Q8NEL0 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC14.94□□□□□ -0.02
CCDC54Q8NEL0 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC14.94□□□□□ -0.02
CCDC54Q8NEL0 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC54Q8NEL0 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC14.94□□□□□ -0.02
CCDC54Q8NEL0 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC54Q8NEL0 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC54Q8NEL0 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC54Q8NEL0 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC14.94□□□□□ -0.02
CCDC54Q8NEL0 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC54Q8NEL0 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC54Q8NEL0 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC14.94□□□□□ -0.02
CCDC54Q8NEL0 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC14.94□□□□□ -0.02
CCDC54Q8NEL0 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC14.94□□□□□ -0.02
CCDC54Q8NEL0 TMPOP1-202ENST00000424642 1267 ntBASIC14.94□□□□□ -0.02
CCDC54Q8NEL0 NKTR-203ENST00000442970 646 ntTSL 2 BASIC14.94□□□□□ -0.02
CCDC54Q8NEL0 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC14.94□□□□□ -0.02
CCDC54Q8NEL0 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC14.94□□□□□ -0.02
CCDC54Q8NEL0 RN7SL850P-201ENST00000579959 291 ntBASIC14.94□□□□□ -0.02
CCDC54Q8NEL0 NTF6B-201ENST00000591913 560 ntBASIC14.94□□□□□ -0.02
CCDC54Q8NEL0 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC54Q8NEL0 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC14.94□□□□□ -0.02
CCDC54Q8NEL0 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC14.94□□□□□ -0.02
CCDC54Q8NEL0 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC54Q8NEL0 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC54Q8NEL0 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC14.94□□□□□ -0.02
CCDC54Q8NEL0 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC54Q8NEL0 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC54Q8NEL0 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC54Q8NEL0 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC54Q8NEL0 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC54Q8NEL0 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC14.94□□□□□ -0.02
CCDC54Q8NEL0 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC54Q8NEL0 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC14.94□□□□□ -0.02
CCDC54Q8NEL0 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC14.94□□□□□ -0.02
CCDC54Q8NEL0 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC14.93□□□□□ -0.02
CCDC54Q8NEL0 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC54Q8NEL0 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC14.93□□□□□ -0.02
CCDC54Q8NEL0 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC54Q8NEL0 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
CCDC54Q8NEL0 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC54Q8NEL0 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC14.93□□□□□ -0.02
CCDC54Q8NEL0 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC54Q8NEL0 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC54Q8NEL0 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
CCDC54Q8NEL0 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC54Q8NEL0 AL162727.3-201ENST00000635661 2787 ntBASIC14.93□□□□□ -0.02
CCDC54Q8NEL0 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC14.93□□□□□ -0.02
CCDC54Q8NEL0 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC54Q8NEL0 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC14.93□□□□□ -0.02
CCDC54Q8NEL0 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC54Q8NEL0 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC54Q8NEL0 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC54Q8NEL0 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC54Q8NEL0 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC54Q8NEL0 RCN1P1-201ENST00000400413 996 ntBASIC14.93□□□□□ -0.02
CCDC54Q8NEL0 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC14.93□□□□□ -0.02
CCDC54Q8NEL0 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC54Q8NEL0 AC073592.5-201ENST00000624854 528 ntBASIC14.93□□□□□ -0.02
CCDC54Q8NEL0 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC54Q8NEL0 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC54Q8NEL0 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC14.93□□□□□ -0.02
CCDC54Q8NEL0 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC14.93□□□□□ -0.02
CCDC54Q8NEL0 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC54Q8NEL0 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC14.93□□□□□ -0.02
CCDC54Q8NEL0 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC54Q8NEL0 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC54Q8NEL0 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC54Q8NEL0 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC54Q8NEL0 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC54Q8NEL0 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC54Q8NEL0 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC54Q8NEL0 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
CCDC54Q8NEL0 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC54Q8NEL0 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC14.93□□□□□ -0.02
CCDC54Q8NEL0 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC54Q8NEL0 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC14.93□□□□□ -0.02
CCDC54Q8NEL0 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC14.93□□□□□ -0.02
CCDC54Q8NEL0 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC54Q8NEL0 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC54Q8NEL0 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC54Q8NEL0 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC14.92□□□□□ -0.02
CCDC54Q8NEL0 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC54Q8NEL0 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC14.92□□□□□ -0.02
CCDC54Q8NEL0 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
CCDC54Q8NEL0 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC54Q8NEL0 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC54Q8NEL0 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC14.92□□□□□ -0.02
CCDC54Q8NEL0 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC14.92□□□□□ -0.02
CCDC54Q8NEL0 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms