Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC21.1■□□□□ 0.97
SYNE4Q8N205 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SYNE4Q8N205 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SYNE4Q8N205 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SYNE4Q8N205 GNAS-203ENST00000306120 1878 ntBASIC21.1■□□□□ 0.97
SYNE4Q8N205 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SYNE4Q8N205 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
SYNE4Q8N205 METTL26-204ENST00000397665 558 ntTSL 2 BASIC21.1■□□□□ 0.97
SYNE4Q8N205 POLD4-211ENST00000539074 714 ntTSL 3 BASIC21.1■□□□□ 0.97
SYNE4Q8N205 AL512356.2-201ENST00000546955 174 ntBASIC21.1■□□□□ 0.97
SYNE4Q8N205 TSFM-210ENST00000550559 897 ntTSL 5 BASIC21.1■□□□□ 0.97
SYNE4Q8N205 AL138918.1-201ENST00000568306 659 ntBASIC21.1■□□□□ 0.97
SYNE4Q8N205 SSH2-211ENST00000590153 570 ntTSL 4 BASIC21.1■□□□□ 0.97
SYNE4Q8N205 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SYNE4Q8N205 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC21.1■□□□□ 0.97
SYNE4Q8N205 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC21.1■□□□□ 0.97
SYNE4Q8N205 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SYNE4Q8N205 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
SYNE4Q8N205 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC21.1■□□□□ 0.97
SYNE4Q8N205 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
SYNE4Q8N205 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
SYNE4Q8N205 LINC00896-202ENST00000609602 2128 ntBASIC21.1■□□□□ 0.97
SYNE4Q8N205 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SYNE4Q8N205 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
SYNE4Q8N205 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SYNE4Q8N205 UXT-AS1-201ENST00000590504 1525 ntBASIC21.09■□□□□ 0.97
SYNE4Q8N205 GATB-213ENST00000515812 1893 ntTSL 5 BASIC21.09■□□□□ 0.97
SYNE4Q8N205 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC21.09■□□□□ 0.97
SYNE4Q8N205 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SYNE4Q8N205 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
SYNE4Q8N205 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SYNE4Q8N205 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SYNE4Q8N205 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
SYNE4Q8N205 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC21.09■□□□□ 0.97
SYNE4Q8N205 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SYNE4Q8N205 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SYNE4Q8N205 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SYNE4Q8N205 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SYNE4Q8N205 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SYNE4Q8N205 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SYNE4Q8N205 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC21.09■□□□□ 0.97
SYNE4Q8N205 UGT1A2P-201ENST00000454886 866 ntBASIC21.09■□□□□ 0.97
SYNE4Q8N205 TERF1P3-201ENST00000505638 1227 ntBASIC21.09■□□□□ 0.97
SYNE4Q8N205 AC087641.1-201ENST00000557561 1021 ntBASIC21.09■□□□□ 0.97
SYNE4Q8N205 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC21.09■□□□□ 0.97
SYNE4Q8N205 AC026150.2-201ENST00000564693 1156 ntBASIC21.09■□□□□ 0.97
SYNE4Q8N205 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SYNE4Q8N205 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
SYNE4Q8N205 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC21.09■□□□□ 0.97
SYNE4Q8N205 AP001059.3-201ENST00000619053 235 ntBASIC21.09■□□□□ 0.97
SYNE4Q8N205 AL161645.1-201ENST00000622716 1255 ntBASIC21.09■□□□□ 0.97
SYNE4Q8N205 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC21.09■□□□□ 0.97
SYNE4Q8N205 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
SYNE4Q8N205 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC21.09■□□□□ 0.97
SYNE4Q8N205 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SYNE4Q8N205 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC21.08■□□□□ 0.97
SYNE4Q8N205 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SYNE4Q8N205 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SYNE4Q8N205 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
SYNE4Q8N205 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
SYNE4Q8N205 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC21.08■□□□□ 0.97
SYNE4Q8N205 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
SYNE4Q8N205 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SYNE4Q8N205 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
SYNE4Q8N205 CENPM-205ENST00000404067 905 ntTSL 3 BASIC21.08■□□□□ 0.97
SYNE4Q8N205 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
SYNE4Q8N205 SPDYE14P-201ENST00000442619 822 ntBASIC21.08■□□□□ 0.97
SYNE4Q8N205 AC109635.5-201ENST00000533593 962 ntBASIC21.08■□□□□ 0.97
SYNE4Q8N205 SLC25A39P2-201ENST00000537614 270 ntBASIC21.08■□□□□ 0.97
SYNE4Q8N205 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC21.08■□□□□ 0.97
SYNE4Q8N205 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC21.08■□□□□ 0.97
SYNE4Q8N205 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC21.08■□□□□ 0.97
SYNE4Q8N205 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC21.08■□□□□ 0.97
SYNE4Q8N205 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC21.08■□□□□ 0.97
SYNE4Q8N205 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC21.08■□□□□ 0.97
SYNE4Q8N205 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
SYNE4Q8N205 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC21.08■□□□□ 0.97
SYNE4Q8N205 AC068880.1-201ENST00000507289 2297 ntBASIC21.08■□□□□ 0.96
SYNE4Q8N205 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
SYNE4Q8N205 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC21.08■□□□□ 0.96
SYNE4Q8N205 FZD10-202ENST00000539839 3282 ntBASIC21.08■□□□□ 0.96
SYNE4Q8N205 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
SYNE4Q8N205 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
SYNE4Q8N205 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.96
SYNE4Q8N205 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
SYNE4Q8N205 CROCCP2-202ENST00000412962 2773 ntBASIC21.08■□□□□ 0.96
SYNE4Q8N205 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
SYNE4Q8N205 FOS-208ENST00000555686 1496 ntTSL 2 BASIC21.07■□□□□ 0.96
SYNE4Q8N205 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
SYNE4Q8N205 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC21.07■□□□□ 0.96
SYNE4Q8N205 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
SYNE4Q8N205 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC21.07■□□□□ 0.96
SYNE4Q8N205 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC21.07■□□□□ 0.96
SYNE4Q8N205 RPL30-202ENST00000396070 440 ntTSL 2 BASIC21.07■□□□□ 0.96
SYNE4Q8N205 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC21.07■□□□□ 0.96
SYNE4Q8N205 HNRNPA1P40-201ENST00000426371 1278 ntBASIC21.07■□□□□ 0.96
SYNE4Q8N205 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC21.07■□□□□ 0.96
SYNE4Q8N205 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
SYNE4Q8N205 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
SYNE4Q8N205 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC21.07■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 47.8 ms