Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC20.65■□□□□ 0.9
CCDC88AQ3V6T2 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC88AQ3V6T2 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC88AQ3V6T2 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
CCDC88AQ3V6T2 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC20.65■□□□□ 0.9
CCDC88AQ3V6T2 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC88AQ3V6T2 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC20.65■□□□□ 0.9
CCDC88AQ3V6T2 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC88AQ3V6T2 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC20.64■□□□□ 0.9
CCDC88AQ3V6T2 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC20.64■□□□□ 0.9
CCDC88AQ3V6T2 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC20.64■□□□□ 0.9
CCDC88AQ3V6T2 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC20.64■□□□□ 0.9
CCDC88AQ3V6T2 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC20.64■□□□□ 0.9
CCDC88AQ3V6T2 AC007967.4-201ENST00000614700 386 ntBASIC20.64■□□□□ 0.9
CCDC88AQ3V6T2 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC20.64■□□□□ 0.9
CCDC88AQ3V6T2 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC20.64■□□□□ 0.9
CCDC88AQ3V6T2 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.9
CCDC88AQ3V6T2 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
CCDC88AQ3V6T2 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
CCDC88AQ3V6T2 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC20.64■□□□□ 0.9
CCDC88AQ3V6T2 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
CCDC88AQ3V6T2 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
CCDC88AQ3V6T2 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
CCDC88AQ3V6T2 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC88AQ3V6T2 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC88AQ3V6T2 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC88AQ3V6T2 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC88AQ3V6T2 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC20.64■□□□□ 0.89
CCDC88AQ3V6T2 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC88AQ3V6T2 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC20.64■□□□□ 0.89
CCDC88AQ3V6T2 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC20.64■□□□□ 0.89
CCDC88AQ3V6T2 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC88AQ3V6T2 AL844908.2-201ENST00000609461 460 ntBASIC20.64■□□□□ 0.89
CCDC88AQ3V6T2 TEX28P1-201ENST00000613479 1221 ntBASIC20.64■□□□□ 0.89
CCDC88AQ3V6T2 TEX28P2-201ENST00000617764 1221 ntBASIC20.64■□□□□ 0.89
CCDC88AQ3V6T2 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC20.64■□□□□ 0.89
CCDC88AQ3V6T2 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC88AQ3V6T2 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC88AQ3V6T2 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC20.64■□□□□ 0.89
CCDC88AQ3V6T2 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC88AQ3V6T2 GNE-204ENST00000539208 2190 ntTSL 2 BASIC20.64■□□□□ 0.89
CCDC88AQ3V6T2 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC88AQ3V6T2 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC88AQ3V6T2 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC20.63■□□□□ 0.89
CCDC88AQ3V6T2 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC88AQ3V6T2 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC88AQ3V6T2 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC88AQ3V6T2 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC20.63■□□□□ 0.89
CCDC88AQ3V6T2 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC88AQ3V6T2 AP006294.1-201ENST00000415407 339 ntBASIC20.63■□□□□ 0.89
CCDC88AQ3V6T2 AC112492.5-201ENST00000421897 457 ntBASIC20.63■□□□□ 0.89
CCDC88AQ3V6T2 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC20.63■□□□□ 0.89
CCDC88AQ3V6T2 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC88AQ3V6T2 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC20.63■□□□□ 0.89
CCDC88AQ3V6T2 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC20.63■□□□□ 0.89
CCDC88AQ3V6T2 COQ4-205ENST00000609948 956 ntTSL 2 BASIC20.63■□□□□ 0.89
CCDC88AQ3V6T2 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC88AQ3V6T2 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC88AQ3V6T2 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC88AQ3V6T2 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC20.63■□□□□ 0.89
CCDC88AQ3V6T2 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC88AQ3V6T2 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC88AQ3V6T2 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC88AQ3V6T2 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
CCDC88AQ3V6T2 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
CCDC88AQ3V6T2 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC20.62■□□□□ 0.89
CCDC88AQ3V6T2 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC20.62■□□□□ 0.89
CCDC88AQ3V6T2 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC20.62■□□□□ 0.89
CCDC88AQ3V6T2 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC20.62■□□□□ 0.89
CCDC88AQ3V6T2 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC88AQ3V6T2 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
CCDC88AQ3V6T2 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
CCDC88AQ3V6T2 AC138969.3-201ENST00000546612 1459 ntBASIC20.62■□□□□ 0.89
CCDC88AQ3V6T2 AC138932.2-201ENST00000548268 1459 ntBASIC20.62■□□□□ 0.89
CCDC88AQ3V6T2 AC126755.4-201ENST00000549796 1459 ntBASIC20.62■□□□□ 0.89
CCDC88AQ3V6T2 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC88AQ3V6T2 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC88AQ3V6T2 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC88AQ3V6T2 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC20.62■□□□□ 0.89
CCDC88AQ3V6T2 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC20.62■□□□□ 0.89
CCDC88AQ3V6T2 MTRF1LP2-201ENST00000506027 1122 ntBASIC20.62■□□□□ 0.89
CCDC88AQ3V6T2 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC20.62■□□□□ 0.89
CCDC88AQ3V6T2 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC20.62■□□□□ 0.89
CCDC88AQ3V6T2 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC20.62■□□□□ 0.89
CCDC88AQ3V6T2 MIR6805-201ENST00000615055 62 ntBASIC20.62■□□□□ 0.89
CCDC88AQ3V6T2 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC20.62■□□□□ 0.89
CCDC88AQ3V6T2 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC88AQ3V6T2 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC88AQ3V6T2 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC88AQ3V6T2 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC88AQ3V6T2 EGFEM1P-202ENST00000431685 1563 ntBASIC20.62■□□□□ 0.89
CCDC88AQ3V6T2 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC20.61■□□□□ 0.89
CCDC88AQ3V6T2 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC88AQ3V6T2 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC88AQ3V6T2 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC88AQ3V6T2 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC88AQ3V6T2 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC88AQ3V6T2 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC88AQ3V6T2 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC88AQ3V6T2 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms