Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 HARS-204ENST00000438307 1789 ntTSL 2 BASIC12.14□□□□□ -0.47
PRKDCP78527 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
PRKDCP78527 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC12.14□□□□□ -0.47
PRKDCP78527 AP001889.1-201ENST00000525414 633 ntBASIC12.13□□□□□ -0.47
PRKDCP78527 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
PRKDCP78527 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC12.13□□□□□ -0.47
PRKDCP78527 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
PRKDCP78527 AC073439.1-201ENST00000624121 1774 ntBASIC12.13□□□□□ -0.47
PRKDCP78527 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
PRKDCP78527 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC12.13□□□□□ -0.47
PRKDCP78527 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC12.13□□□□□ -0.47
PRKDCP78527 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
PRKDCP78527 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
PRKDCP78527 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC12.13□□□□□ -0.47
PRKDCP78527 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC12.13□□□□□ -0.47
PRKDCP78527 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
PRKDCP78527 MIR33B-201ENST00000385104 96 ntBASIC12.13□□□□□ -0.47
PRKDCP78527 RHOA-206ENST00000454011 889 ntTSL 2 BASIC12.13□□□□□ -0.47
PRKDCP78527 PTK2-225ENST00000520892 571 ntTSL 4 BASIC12.13□□□□□ -0.47
PRKDCP78527 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC12.13□□□□□ -0.47
PRKDCP78527 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC12.13□□□□□ -0.47
PRKDCP78527 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
PRKDCP78527 AL118558.3-201ENST00000607414 1079 ntBASIC12.13□□□□□ -0.47
PRKDCP78527 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
PRKDCP78527 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
PRKDCP78527 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
PRKDCP78527 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC12.13□□□□□ -0.47
PRKDCP78527 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
PRKDCP78527 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC12.13□□□□□ -0.47
PRKDCP78527 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
PRKDCP78527 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC12.13□□□□□ -0.47
PRKDCP78527 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC12.13□□□□□ -0.47
PRKDCP78527 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC12.13□□□□□ -0.47
PRKDCP78527 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC12.13□□□□□ -0.47
PRKDCP78527 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC12.13□□□□□ -0.47
PRKDCP78527 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC12.13□□□□□ -0.47
PRKDCP78527 LINC00895-201ENST00000629028 1637 ntBASIC12.13□□□□□ -0.47
PRKDCP78527 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
PRKDCP78527 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC12.13□□□□□ -0.47
PRKDCP78527 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC12.13□□□□□ -0.47
PRKDCP78527 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC12.13□□□□□ -0.47
PRKDCP78527 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
PRKDCP78527 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC12.13□□□□□ -0.47
PRKDCP78527 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC12.13□□□□□ -0.47
PRKDCP78527 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC12.13□□□□□ -0.47
PRKDCP78527 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
PRKDCP78527 HCG18-245ENST00000602550 559 ntTSL 4 BASIC12.13□□□□□ -0.47
PRKDCP78527 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
PRKDCP78527 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
PRKDCP78527 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
PRKDCP78527 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC12.12□□□□□ -0.47
PRKDCP78527 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
PRKDCP78527 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
PRKDCP78527 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC12.12□□□□□ -0.47
PRKDCP78527 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC12.12□□□□□ -0.47
PRKDCP78527 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC12.12□□□□□ -0.47
PRKDCP78527 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
PRKDCP78527 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC12.12□□□□□ -0.47
PRKDCP78527 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
PRKDCP78527 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC12.12□□□□□ -0.47
PRKDCP78527 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC12.12□□□□□ -0.47
PRKDCP78527 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
PRKDCP78527 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC12.12□□□□□ -0.47
PRKDCP78527 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
PRKDCP78527 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC12.12□□□□□ -0.47
PRKDCP78527 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
PRKDCP78527 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC12.12□□□□□ -0.47
PRKDCP78527 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC12.12□□□□□ -0.47
PRKDCP78527 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC12.12□□□□□ -0.47
PRKDCP78527 U62317.3-201ENST00000608319 855 ntBASIC12.12□□□□□ -0.47
PRKDCP78527 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
PRKDCP78527 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
PRKDCP78527 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC12.12□□□□□ -0.47
PRKDCP78527 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC12.12□□□□□ -0.47
PRKDCP78527 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC12.12□□□□□ -0.47
PRKDCP78527 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC12.12□□□□□ -0.47
PRKDCP78527 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
PRKDCP78527 FBXO44-203ENST00000376760 822 ntTSL 2 BASIC12.12□□□□□ -0.47
PRKDCP78527 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC12.12□□□□□ -0.47
PRKDCP78527 PRYP6-201ENST00000514804 343 ntBASIC12.12□□□□□ -0.47
PRKDCP78527 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC12.12□□□□□ -0.47
PRKDCP78527 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC12.12□□□□□ -0.47
PRKDCP78527 AC005695.3-201ENST00000614522 232 ntBASIC12.12□□□□□ -0.47
PRKDCP78527 PODN-203ENST00000395871 2744 ntTSL 5 BASIC12.12□□□□□ -0.47
PRKDCP78527 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
PRKDCP78527 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
PRKDCP78527 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC12.12□□□□□ -0.47
PRKDCP78527 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
PRKDCP78527 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
PRKDCP78527 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC12.11□□□□□ -0.47
PRKDCP78527 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC12.11□□□□□ -0.47
PRKDCP78527 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC12.11□□□□□ -0.47
PRKDCP78527 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
PRKDCP78527 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC12.11□□□□□ -0.47
PRKDCP78527 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
PRKDCP78527 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
PRKDCP78527 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC12.11□□□□□ -0.47
PRKDCP78527 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC12.11□□□□□ -0.47
PRKDCP78527 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
PRKDCP78527 ANK1-203ENST00000314214 1185 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 92.6 ms