Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
CKS1BP61024 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC12.05□□□□□ -0.48
CKS1BP61024 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
CKS1BP61024 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC12.05□□□□□ -0.48
CKS1BP61024 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC12.05□□□□□ -0.48
CKS1BP61024 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
CKS1BP61024 AC022898.2-201ENST00000616822 1312 ntBASIC12.05□□□□□ -0.48
CKS1BP61024 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC12.05□□□□□ -0.48
CKS1BP61024 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
CKS1BP61024 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
CKS1BP61024 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
CKS1BP61024 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC12.05□□□□□ -0.48
CKS1BP61024 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
CKS1BP61024 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
CKS1BP61024 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
CKS1BP61024 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC12.04□□□□□ -0.48
CKS1BP61024 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC12.04□□□□□ -0.48
CKS1BP61024 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC12.04□□□□□ -0.48
CKS1BP61024 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC12.04□□□□□ -0.48
CKS1BP61024 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC12.04□□□□□ -0.48
CKS1BP61024 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC12.04□□□□□ -0.48
CKS1BP61024 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
CKS1BP61024 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC12.04□□□□□ -0.48
CKS1BP61024 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
CKS1BP61024 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC12.04□□□□□ -0.48
CKS1BP61024 TOR1AIP1-201ENST00000271583 3044 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
CKS1BP61024 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC12.04□□□□□ -0.48
CKS1BP61024 GNAO1-202ENST00000262494 5767 ntAPPRIS ALT1 TSL 1 (best) BASIC12.04□□□□□ -0.48
CKS1BP61024 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC12.04□□□□□ -0.48
CKS1BP61024 AP001094.4-201ENST00000579008 2176 ntBASIC12.04□□□□□ -0.48
CKS1BP61024 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
CKS1BP61024 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
CKS1BP61024 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
CKS1BP61024 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
CKS1BP61024 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC12.04□□□□□ -0.48
CKS1BP61024 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
CKS1BP61024 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
CKS1BP61024 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC12.04□□□□□ -0.48
CKS1BP61024 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC12.04□□□□□ -0.48
CKS1BP61024 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC12.04□□□□□ -0.48
CKS1BP61024 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC12.04□□□□□ -0.48
CKS1BP61024 EMC9-206ENST00000560403 872 ntTSL 2 BASIC12.04□□□□□ -0.48
CKS1BP61024 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC12.04□□□□□ -0.48
CKS1BP61024 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC12.04□□□□□ -0.48
CKS1BP61024 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC12.04□□□□□ -0.48
CKS1BP61024 SPIB-206ENST00000596074 847 ntTSL 2 BASIC12.04□□□□□ -0.48
CKS1BP61024 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
CKS1BP61024 AP001412.1-201ENST00000608405 714 ntBASIC12.04□□□□□ -0.48
CKS1BP61024 DECR2-212ENST00000627716 352 ntTSL 2 BASIC12.04□□□□□ -0.48
CKS1BP61024 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC12.04□□□□□ -0.48
CKS1BP61024 AC144831.1-201ENST00000573312 2656 ntBASIC12.04□□□□□ -0.48
CKS1BP61024 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
CKS1BP61024 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
CKS1BP61024 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
CKS1BP61024 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
CKS1BP61024 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC12.04□□□□□ -0.48
CKS1BP61024 FBXL19-201ENST00000338343 3965 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
CKS1BP61024 MBP-202ENST00000355994 2772 ntTSL 5 BASIC12.04□□□□□ -0.48
CKS1BP61024 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC12.04□□□□□ -0.48
CKS1BP61024 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
CKS1BP61024 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC12.04□□□□□ -0.48
CKS1BP61024 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC12.04□□□□□ -0.48
CKS1BP61024 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
CKS1BP61024 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC12.04□□□□□ -0.48
CKS1BP61024 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
CKS1BP61024 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
CKS1BP61024 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
CKS1BP61024 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
CKS1BP61024 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC12.04□□□□□ -0.48
CKS1BP61024 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
CKS1BP61024 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CKS1BP61024 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
CKS1BP61024 AC022188.1-201ENST00000620960 1664 ntBASIC12.03□□□□□ -0.48
CKS1BP61024 CDK11B-203ENST00000341832 2998 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CKS1BP61024 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
CKS1BP61024 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CKS1BP61024 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC12.03□□□□□ -0.48
CKS1BP61024 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
CKS1BP61024 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC12.03□□□□□ -0.48
CKS1BP61024 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC12.03□□□□□ -0.48
CKS1BP61024 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC12.03□□□□□ -0.48
CKS1BP61024 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CKS1BP61024 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC12.03□□□□□ -0.48
CKS1BP61024 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC12.03□□□□□ -0.48
CKS1BP61024 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CKS1BP61024 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC12.03□□□□□ -0.48
CKS1BP61024 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CKS1BP61024 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CKS1BP61024 HARS-201ENST00000307633 1780 ntTSL 2 BASIC12.03□□□□□ -0.48
CKS1BP61024 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC12.03□□□□□ -0.48
CKS1BP61024 MARS-201ENST00000262027 2905 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CKS1BP61024 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
CKS1BP61024 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CKS1BP61024 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
CKS1BP61024 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
CKS1BP61024 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC12.03□□□□□ -0.48
CKS1BP61024 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC12.03□□□□□ -0.48
CKS1BP61024 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC12.03□□□□□ -0.48
CKS1BP61024 SAPCD2P4-201ENST00000424595 1171 ntBASIC12.03□□□□□ -0.48
CKS1BP61024 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms