Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HTTP42858 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC18.91■□□□□ 0.62
HTTP42858 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
HTTP42858 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC18.91■□□□□ 0.62
HTTP42858 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC18.91■□□□□ 0.62
HTTP42858 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HTTP42858 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
HTTP42858 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HTTP42858 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HTTP42858 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
HTTP42858 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
HTTP42858 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC18.91■□□□□ 0.62
HTTP42858 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC18.91■□□□□ 0.62
HTTP42858 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC18.91■□□□□ 0.62
HTTP42858 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC18.91■□□□□ 0.62
HTTP42858 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
HTTP42858 AC087499.6-201ENST00000411576 835 ntBASIC18.91■□□□□ 0.62
HTTP42858 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC18.91■□□□□ 0.62
HTTP42858 RHOQP1-201ENST00000555758 579 ntBASIC18.91■□□□□ 0.62
HTTP42858 AC023310.3-201ENST00000557027 670 ntBASIC18.91■□□□□ 0.62
HTTP42858 AC100756.1-201ENST00000562736 682 ntBASIC18.91■□□□□ 0.62
HTTP42858 AC138749.3-201ENST00000567691 622 ntBASIC18.91■□□□□ 0.62
HTTP42858 AL589739.1-201ENST00000607720 493 ntBASIC18.91■□□□□ 0.62
HTTP42858 AC116165.1-201ENST00000611806 668 ntBASIC18.91■□□□□ 0.62
HTTP42858 RETN-203ENST00000629642 400 ntTSL 5 BASIC18.91■□□□□ 0.62
HTTP42858 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
HTTP42858 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
HTTP42858 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
HTTP42858 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HTTP42858 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
HTTP42858 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
HTTP42858 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC18.91■□□□□ 0.62
HTTP42858 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HTTP42858 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HTTP42858 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
HTTP42858 AC007431.3-201ENST00000623221 587 ntBASIC18.91■□□□□ 0.62
HTTP42858 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HTTP42858 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HTTP42858 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC18.91■□□□□ 0.62
HTTP42858 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.62
HTTP42858 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC18.9■□□□□ 0.62
HTTP42858 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC18.9■□□□□ 0.62
HTTP42858 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
HTTP42858 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
HTTP42858 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC18.9■□□□□ 0.62
HTTP42858 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
HTTP42858 CD81-207ENST00000481687 890 ntTSL 2 BASIC18.9■□□□□ 0.62
HTTP42858 AC011495.1-201ENST00000498085 584 ntBASIC18.9■□□□□ 0.62
HTTP42858 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC18.9■□□□□ 0.62
HTTP42858 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC18.9■□□□□ 0.62
HTTP42858 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
HTTP42858 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
HTTP42858 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
HTTP42858 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC18.9■□□□□ 0.62
HTTP42858 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC18.9■□□□□ 0.62
HTTP42858 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
HTTP42858 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HTTP42858 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HTTP42858 AC073439.1-201ENST00000624121 1774 ntBASIC18.9■□□□□ 0.62
HTTP42858 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
HTTP42858 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC18.9■□□□□ 0.62
HTTP42858 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC18.9■□□□□ 0.62
HTTP42858 AC007389.4-201ENST00000454674 793 ntBASIC18.89■□□□□ 0.62
HTTP42858 IFITM3-202ENST00000526811 543 ntAPPRIS ALT1 TSL 5 BASIC18.89■□□□□ 0.62
HTTP42858 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC18.89■□□□□ 0.62
HTTP42858 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.62
HTTP42858 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
HTTP42858 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
HTTP42858 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
HTTP42858 CDC14C-201ENST00000428251 1719 ntBASIC18.89■□□□□ 0.62
HTTP42858 AC131009.4-201ENST00000624048 1740 ntBASIC18.89■□□□□ 0.62
HTTP42858 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
HTTP42858 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
HTTP42858 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
HTTP42858 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
HTTP42858 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC18.89■□□□□ 0.61
HTTP42858 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
HTTP42858 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
HTTP42858 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
HTTP42858 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC18.89■□□□□ 0.61
HTTP42858 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
HTTP42858 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC18.89■□□□□ 0.61
HTTP42858 AC093503.3-201ENST00000624917 2352 ntBASIC18.89■□□□□ 0.61
HTTP42858 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
HTTP42858 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC18.89■□□□□ 0.61
HTTP42858 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
HTTP42858 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC18.89■□□□□ 0.61
HTTP42858 AC005833.2-201ENST00000527518 1249 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
HTTP42858 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
HTTP42858 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC18.89■□□□□ 0.61
HTTP42858 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC18.89■□□□□ 0.61
HTTP42858 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC18.88■□□□□ 0.61
HTTP42858 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC18.88■□□□□ 0.61
HTTP42858 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
HTTP42858 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC18.88■□□□□ 0.61
HTTP42858 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
HTTP42858 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC18.88■□□□□ 0.61
HTTP42858 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
HTTP42858 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
HTTP42858 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC18.88■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 54.2 ms