Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL5A1P20908 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC16.18■□□□□ 0.18
COL5A1P20908 GPER1-207ENST00000619052 571 ntTSL 2 BASIC16.18■□□□□ 0.18
COL5A1P20908 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC16.18■□□□□ 0.18
COL5A1P20908 SERF2-217ENST00000630046 862 ntTSL 5 BASIC16.18■□□□□ 0.18
COL5A1P20908 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC16.18■□□□□ 0.18
COL5A1P20908 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
COL5A1P20908 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL5A1P20908 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL5A1P20908 HARS-204ENST00000438307 1789 ntTSL 2 BASIC16.18■□□□□ 0.18
COL5A1P20908 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC16.18■□□□□ 0.18
COL5A1P20908 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL5A1P20908 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
COL5A1P20908 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL5A1P20908 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL5A1P20908 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL5A1P20908 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
COL5A1P20908 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
COL5A1P20908 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC16.18■□□□□ 0.18
COL5A1P20908 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
COL5A1P20908 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC16.17■□□□□ 0.18
COL5A1P20908 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
COL5A1P20908 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC16.17■□□□□ 0.18
COL5A1P20908 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC16.17■□□□□ 0.18
COL5A1P20908 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL5A1P20908 TMPRSS11CP-201ENST00000453277 683 ntBASIC16.17■□□□□ 0.18
COL5A1P20908 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC16.17■□□□□ 0.18
COL5A1P20908 REEP4-207ENST00000523293 913 ntTSL 3 BASIC16.17■□□□□ 0.18
COL5A1P20908 NOP2-220ENST00000545915 630 ntTSL 2 BASIC16.17■□□□□ 0.18
COL5A1P20908 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL5A1P20908 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC16.17■□□□□ 0.18
COL5A1P20908 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
COL5A1P20908 AC004840.1-201ENST00000636359 365 ntBASIC16.17■□□□□ 0.18
COL5A1P20908 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
COL5A1P20908 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
COL5A1P20908 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
COL5A1P20908 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
COL5A1P20908 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC16.17■□□□□ 0.18
COL5A1P20908 AC067852.2-201ENST00000590513 2313 ntBASIC16.17■□□□□ 0.18
COL5A1P20908 CD276-203ENST00000537340 2439 ntTSL 2 BASIC16.17■□□□□ 0.18
COL5A1P20908 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
COL5A1P20908 HNRNPA3P1-201ENST00000401429 1139 ntBASIC16.17■□□□□ 0.18
COL5A1P20908 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC16.17■□□□□ 0.18
COL5A1P20908 HNRNPA3P5-201ENST00000455201 833 ntBASIC16.17■□□□□ 0.18
COL5A1P20908 MPI-209ENST00000564003 1195 ntTSL 2 BASIC16.17■□□□□ 0.18
COL5A1P20908 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC16.17■□□□□ 0.18
COL5A1P20908 AL132655.2-201ENST00000596276 594 ntBASIC16.17■□□□□ 0.18
COL5A1P20908 MIR6752-201ENST00000618442 71 ntBASIC16.17■□□□□ 0.18
COL5A1P20908 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC16.17■□□□□ 0.18
COL5A1P20908 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC16.17■□□□□ 0.18
COL5A1P20908 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC16.17■□□□□ 0.18
COL5A1P20908 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
COL5A1P20908 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
COL5A1P20908 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC16.16■□□□□ 0.18
COL5A1P20908 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL5A1P20908 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
COL5A1P20908 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
COL5A1P20908 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
COL5A1P20908 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC16.16■□□□□ 0.18
COL5A1P20908 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
COL5A1P20908 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL5A1P20908 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL5A1P20908 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL5A1P20908 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC16.16■□□□□ 0.18
COL5A1P20908 PRYP6-201ENST00000514804 343 ntBASIC16.16■□□□□ 0.18
COL5A1P20908 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC16.16■□□□□ 0.18
COL5A1P20908 PRR29-204ENST00000577953 565 ntTSL 4 BASIC16.16■□□□□ 0.18
COL5A1P20908 CYP2A7P1-201ENST00000595391 815 ntBASIC16.16■□□□□ 0.18
COL5A1P20908 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
COL5A1P20908 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL5A1P20908 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL5A1P20908 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
COL5A1P20908 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC16.16■□□□□ 0.18
COL5A1P20908 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC16.16■□□□□ 0.18
COL5A1P20908 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC16.16■□□□□ 0.18
COL5A1P20908 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
COL5A1P20908 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
COL5A1P20908 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL5A1P20908 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL5A1P20908 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL5A1P20908 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
COL5A1P20908 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
COL5A1P20908 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC16.15■□□□□ 0.18
COL5A1P20908 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC16.15■□□□□ 0.18
COL5A1P20908 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC16.15■□□□□ 0.18
COL5A1P20908 AC021097.1-201ENST00000607902 574 ntBASIC16.15■□□□□ 0.18
COL5A1P20908 AL844908.2-201ENST00000609461 460 ntBASIC16.15■□□□□ 0.18
COL5A1P20908 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL5A1P20908 TEX28P1-201ENST00000613479 1221 ntBASIC16.15■□□□□ 0.18
COL5A1P20908 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC16.15■□□□□ 0.18
COL5A1P20908 TEX28P2-201ENST00000617764 1221 ntBASIC16.15■□□□□ 0.18
COL5A1P20908 AP001350.2-201ENST00000625104 1094 ntBASIC16.15■□□□□ 0.18
COL5A1P20908 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC16.15■□□□□ 0.18
COL5A1P20908 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL5A1P20908 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL5A1P20908 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
COL5A1P20908 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
COL5A1P20908 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
COL5A1P20908 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL5A1P20908 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms