Protein–RNA interactions for Protein: O95749

GGPS1, Geranylgeranyl pyrophosphate synthase, humanhuman

Predictions only

Length 300 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GGPS1O95749 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
GGPS1O95749 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
GGPS1O95749 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
GGPS1O95749 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
GGPS1O95749 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
GGPS1O95749 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
GGPS1O95749 SLC25A1P3-201ENST00000395415 828 ntBASIC19.11■□□□□ 0.65
GGPS1O95749 AC004461.1-201ENST00000412461 403 ntBASIC19.11■□□□□ 0.65
GGPS1O95749 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC19.11■□□□□ 0.65
GGPS1O95749 AC140658.5-201ENST00000438532 169 ntBASIC19.11■□□□□ 0.65
GGPS1O95749 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
GGPS1O95749 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC19.11■□□□□ 0.65
GGPS1O95749 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
GGPS1O95749 MIR4515-201ENST00000584082 81 ntBASIC19.11■□□□□ 0.65
GGPS1O95749 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
GGPS1O95749 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC19.11■□□□□ 0.65
GGPS1O95749 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
GGPS1O95749 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
GGPS1O95749 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
GGPS1O95749 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC19.11■□□□□ 0.65
GGPS1O95749 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
GGPS1O95749 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
GGPS1O95749 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
GGPS1O95749 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC19.11■□□□□ 0.65
GGPS1O95749 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
GGPS1O95749 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC19.1■□□□□ 0.65
GGPS1O95749 AC016396.2-201ENST00000562575 1417 ntBASIC19.1■□□□□ 0.65
GGPS1O95749 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
GGPS1O95749 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
GGPS1O95749 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC19.1■□□□□ 0.65
GGPS1O95749 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
GGPS1O95749 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
GGPS1O95749 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
GGPS1O95749 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC19.1■□□□□ 0.65
GGPS1O95749 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
GGPS1O95749 ADH5P3-201ENST00000433842 1137 ntBASIC19.1■□□□□ 0.65
GGPS1O95749 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
GGPS1O95749 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
GGPS1O95749 AC022145.2-201ENST00000598203 171 ntBASIC19.1■□□□□ 0.65
GGPS1O95749 AC004835.2-201ENST00000603762 682 ntBASIC19.1■□□□□ 0.65
GGPS1O95749 BSG-214ENST00000614867 960 ntTSL 3 BASIC19.1■□□□□ 0.65
GGPS1O95749 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
GGPS1O95749 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
GGPS1O95749 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
GGPS1O95749 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
GGPS1O95749 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
GGPS1O95749 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
GGPS1O95749 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC19.1■□□□□ 0.65
GGPS1O95749 AL121761.2-201ENST00000598007 1648 ntBASIC19.1■□□□□ 0.65
GGPS1O95749 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
GGPS1O95749 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC19.1■□□□□ 0.65
GGPS1O95749 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
GGPS1O95749 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC19.1■□□□□ 0.65
GGPS1O95749 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
GGPS1O95749 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC19.09■□□□□ 0.65
GGPS1O95749 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC19.09■□□□□ 0.65
GGPS1O95749 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
GGPS1O95749 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC19.09■□□□□ 0.65
GGPS1O95749 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC19.09■□□□□ 0.65
GGPS1O95749 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
GGPS1O95749 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
GGPS1O95749 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
GGPS1O95749 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC19.09■□□□□ 0.65
GGPS1O95749 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
GGPS1O95749 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC19.09■□□□□ 0.65
GGPS1O95749 AC093525.9-201ENST00000624961 1746 ntBASIC19.09■□□□□ 0.65
GGPS1O95749 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
GGPS1O95749 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC19.09■□□□□ 0.65
GGPS1O95749 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
GGPS1O95749 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
GGPS1O95749 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
GGPS1O95749 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
GGPS1O95749 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
GGPS1O95749 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC19.09■□□□□ 0.65
GGPS1O95749 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
GGPS1O95749 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC19.09■□□□□ 0.65
GGPS1O95749 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC19.09■□□□□ 0.65
GGPS1O95749 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC19.09■□□□□ 0.65
GGPS1O95749 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC19.09■□□□□ 0.65
GGPS1O95749 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC19.09■□□□□ 0.65
GGPS1O95749 AC005412.3-201ENST00000580309 715 ntBASIC19.09■□□□□ 0.65
GGPS1O95749 AC099522.2-201ENST00000607001 744 ntBASIC19.09■□□□□ 0.65
GGPS1O95749 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC19.09■□□□□ 0.65
GGPS1O95749 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC19.09■□□□□ 0.65
GGPS1O95749 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
GGPS1O95749 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC19.09■□□□□ 0.65
GGPS1O95749 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC19.09■□□□□ 0.65
GGPS1O95749 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
GGPS1O95749 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC19.09■□□□□ 0.65
GGPS1O95749 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
GGPS1O95749 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
GGPS1O95749 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
GGPS1O95749 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
GGPS1O95749 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
GGPS1O95749 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC19.09■□□□□ 0.65
GGPS1O95749 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
GGPS1O95749 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
GGPS1O95749 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC19.09■□□□□ 0.65
GGPS1O95749 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
GGPS1O95749 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms