Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
CACNA1FO60840 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CACNA1FO60840 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC21.26■□□□□ 0.99
CACNA1FO60840 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CACNA1FO60840 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC21.26■□□□□ 0.99
CACNA1FO60840 PC-204ENST00000524491 1714 ntTSL 2 BASIC21.26■□□□□ 0.99
CACNA1FO60840 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC21.26■□□□□ 0.99
CACNA1FO60840 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CACNA1FO60840 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC21.26■□□□□ 0.99
CACNA1FO60840 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
CACNA1FO60840 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CACNA1FO60840 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC21.26■□□□□ 0.99
CACNA1FO60840 AC092474.2-201ENST00000424288 719 ntBASIC21.26■□□□□ 0.99
CACNA1FO60840 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC21.26■□□□□ 0.99
CACNA1FO60840 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CACNA1FO60840 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC21.26■□□□□ 0.99
CACNA1FO60840 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC21.26■□□□□ 0.99
CACNA1FO60840 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC21.26■□□□□ 0.99
CACNA1FO60840 AP001059.3-201ENST00000619053 235 ntBASIC21.26■□□□□ 0.99
CACNA1FO60840 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC21.26■□□□□ 0.99
CACNA1FO60840 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CACNA1FO60840 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CACNA1FO60840 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CACNA1FO60840 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CACNA1FO60840 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC21.26■□□□□ 0.99
CACNA1FO60840 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC21.25■□□□□ 0.99
CACNA1FO60840 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
CACNA1FO60840 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC21.25■□□□□ 0.99
CACNA1FO60840 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CACNA1FO60840 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CACNA1FO60840 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CACNA1FO60840 CNN2P11-201ENST00000429351 262 ntBASIC21.25■□□□□ 0.99
CACNA1FO60840 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC21.25■□□□□ 0.99
CACNA1FO60840 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC21.25■□□□□ 0.99
CACNA1FO60840 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC21.25■□□□□ 0.99
CACNA1FO60840 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC21.25■□□□□ 0.99
CACNA1FO60840 SSH2-211ENST00000590153 570 ntTSL 4 BASIC21.25■□□□□ 0.99
CACNA1FO60840 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC21.25■□□□□ 0.99
CACNA1FO60840 AP001160.2-201ENST00000596071 487 ntBASIC21.25■□□□□ 0.99
CACNA1FO60840 AP001350.2-201ENST00000625104 1094 ntBASIC21.25■□□□□ 0.99
CACNA1FO60840 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC21.25■□□□□ 0.99
CACNA1FO60840 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CACNA1FO60840 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC21.25■□□□□ 0.99
CACNA1FO60840 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CACNA1FO60840 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
CACNA1FO60840 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CACNA1FO60840 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CACNA1FO60840 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
CACNA1FO60840 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
CACNA1FO60840 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CACNA1FO60840 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC21.25■□□□□ 0.99
CACNA1FO60840 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CACNA1FO60840 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC21.25■□□□□ 0.99
CACNA1FO60840 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CACNA1FO60840 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CACNA1FO60840 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CACNA1FO60840 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC21.25■□□□□ 0.99
CACNA1FO60840 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
CACNA1FO60840 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CACNA1FO60840 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CACNA1FO60840 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
CACNA1FO60840 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC21.25■□□□□ 0.99
CACNA1FO60840 CD81-202ENST00000381036 880 ntTSL 3 BASIC21.25■□□□□ 0.99
CACNA1FO60840 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC21.25■□□□□ 0.99
CACNA1FO60840 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC21.25■□□□□ 0.99
CACNA1FO60840 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC21.25■□□□□ 0.99
CACNA1FO60840 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
CACNA1FO60840 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CACNA1FO60840 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
CACNA1FO60840 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CACNA1FO60840 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC21.24■□□□□ 0.99
CACNA1FO60840 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CACNA1FO60840 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
CACNA1FO60840 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CACNA1FO60840 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CACNA1FO60840 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CACNA1FO60840 AC080080.1-201ENST00000625121 2420 ntBASIC21.24■□□□□ 0.99
CACNA1FO60840 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CACNA1FO60840 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC21.24■□□□□ 0.99
CACNA1FO60840 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
CACNA1FO60840 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC21.24■□□□□ 0.99
CACNA1FO60840 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC21.24■□□□□ 0.99
CACNA1FO60840 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CACNA1FO60840 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
CACNA1FO60840 URGCP-206ENST00000446958 365 ntTSL 2 BASIC21.24■□□□□ 0.99
CACNA1FO60840 AC105233.2-201ENST00000523697 349 ntBASIC21.24■□□□□ 0.99
CACNA1FO60840 AF228730.5-201ENST00000530288 346 ntBASIC21.24■□□□□ 0.99
CACNA1FO60840 AC006538.3-201ENST00000612495 578 ntBASIC21.24■□□□□ 0.99
CACNA1FO60840 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
CACNA1FO60840 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC21.24■□□□□ 0.99
CACNA1FO60840 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CACNA1FO60840 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC21.24■□□□□ 0.99
CACNA1FO60840 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
CACNA1FO60840 AC020916.1-201ENST00000587762 1774 ntBASIC21.24■□□□□ 0.99
CACNA1FO60840 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
CACNA1FO60840 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC21.24■□□□□ 0.99
CACNA1FO60840 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC21.24■□□□□ 0.99
CACNA1FO60840 EML3-212ENST00000494176 2901 ntTSL 2 BASIC21.24■□□□□ 0.99
CACNA1FO60840 EML3-216ENST00000529309 2909 ntTSL 2 BASIC21.24■□□□□ 0.99
CACNA1FO60840 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms