Protein–RNA interactions for Protein: A0PJX4

SHISA3, Protein shisa-3 homolog, humanhuman

Predictions only

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHISA3A0PJX4 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC14.92□□□□□ -0.02
SHISA3A0PJX4 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SHISA3A0PJX4 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SHISA3A0PJX4 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC14.92□□□□□ -0.02
SHISA3A0PJX4 KRT8P10-201ENST00000450021 1447 ntBASIC14.92□□□□□ -0.02
SHISA3A0PJX4 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
SHISA3A0PJX4 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
SHISA3A0PJX4 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SHISA3A0PJX4 AL596087.1-201ENST00000400979 1969 ntBASIC14.91□□□□□ -0.02
SHISA3A0PJX4 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SHISA3A0PJX4 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SHISA3A0PJX4 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SHISA3A0PJX4 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC14.91□□□□□ -0.02
SHISA3A0PJX4 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SHISA3A0PJX4 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SHISA3A0PJX4 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
SHISA3A0PJX4 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
SHISA3A0PJX4 SPDYE15P-201ENST00000424157 909 ntBASIC14.91□□□□□ -0.02
SHISA3A0PJX4 AP002490.2-201ENST00000524791 560 ntBASIC14.91□□□□□ -0.02
SHISA3A0PJX4 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC14.91□□□□□ -0.02
SHISA3A0PJX4 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC14.91□□□□□ -0.02
SHISA3A0PJX4 DUX4L17-201ENST00000557360 1267 ntBASIC14.91□□□□□ -0.02
SHISA3A0PJX4 NAA38-203ENST00000575071 553 ntTSL 2 BASIC14.91□□□□□ -0.02
SHISA3A0PJX4 SNX21-213ENST00000614929 587 ntTSL 5 BASIC14.91□□□□□ -0.02
SHISA3A0PJX4 AL023973.1-201ENST00000624619 620 ntBASIC14.91□□□□□ -0.02
SHISA3A0PJX4 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC14.91□□□□□ -0.02
SHISA3A0PJX4 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
SHISA3A0PJX4 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
SHISA3A0PJX4 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC14.91□□□□□ -0.02
SHISA3A0PJX4 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SHISA3A0PJX4 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
SHISA3A0PJX4 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
SHISA3A0PJX4 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SHISA3A0PJX4 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC14.9□□□□□ -0.02
SHISA3A0PJX4 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
SHISA3A0PJX4 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC14.9□□□□□ -0.02
SHISA3A0PJX4 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SHISA3A0PJX4 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
SHISA3A0PJX4 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC14.9□□□□□ -0.02
SHISA3A0PJX4 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC14.9□□□□□ -0.02
SHISA3A0PJX4 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC14.9□□□□□ -0.02
SHISA3A0PJX4 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
SHISA3A0PJX4 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SHISA3A0PJX4 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SHISA3A0PJX4 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC14.9□□□□□ -0.02
SHISA3A0PJX4 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC14.9□□□□□ -0.02
SHISA3A0PJX4 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
SHISA3A0PJX4 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC14.9□□□□□ -0.02
SHISA3A0PJX4 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SHISA3A0PJX4 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
SHISA3A0PJX4 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
SHISA3A0PJX4 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
SHISA3A0PJX4 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC14.9□□□□□ -0.02
SHISA3A0PJX4 TSPY15P-201ENST00000457163 923 ntBASIC14.9□□□□□ -0.02
SHISA3A0PJX4 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
SHISA3A0PJX4 AC141257.4-201ENST00000634557 245 ntBASIC14.9□□□□□ -0.02
SHISA3A0PJX4 AC136944.6-201ENST00000634818 245 ntBASIC14.9□□□□□ -0.02
SHISA3A0PJX4 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC14.9□□□□□ -0.02
SHISA3A0PJX4 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SHISA3A0PJX4 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SHISA3A0PJX4 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC14.9□□□□□ -0.02
SHISA3A0PJX4 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SHISA3A0PJX4 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SHISA3A0PJX4 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
SHISA3A0PJX4 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC14.9□□□□□ -0.02
SHISA3A0PJX4 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
SHISA3A0PJX4 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SHISA3A0PJX4 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SHISA3A0PJX4 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC14.9□□□□□ -0.02
SHISA3A0PJX4 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC14.9□□□□□ -0.02
SHISA3A0PJX4 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SHISA3A0PJX4 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
SHISA3A0PJX4 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SHISA3A0PJX4 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
SHISA3A0PJX4 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC14.89□□□□□ -0.03
SHISA3A0PJX4 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
SHISA3A0PJX4 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SHISA3A0PJX4 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
SHISA3A0PJX4 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC14.89□□□□□ -0.03
SHISA3A0PJX4 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SHISA3A0PJX4 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SHISA3A0PJX4 HR-201ENST00000312841 5351 ntTSL 5 BASIC14.89□□□□□ -0.03
SHISA3A0PJX4 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SHISA3A0PJX4 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
SHISA3A0PJX4 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SHISA3A0PJX4 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
SHISA3A0PJX4 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
SHISA3A0PJX4 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
SHISA3A0PJX4 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC14.89□□□□□ -0.03
SHISA3A0PJX4 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC14.89□□□□□ -0.03
SHISA3A0PJX4 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
SHISA3A0PJX4 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC14.89□□□□□ -0.03
SHISA3A0PJX4 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC14.89□□□□□ -0.03
SHISA3A0PJX4 AP003733.1-201ENST00000491725 852 ntBASIC14.89□□□□□ -0.03
SHISA3A0PJX4 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC14.89□□□□□ -0.03
SHISA3A0PJX4 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC14.89□□□□□ -0.03
SHISA3A0PJX4 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC14.89□□□□□ -0.03
SHISA3A0PJX4 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC14.89□□□□□ -0.03
SHISA3A0PJX4 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC14.89□□□□□ -0.03
SHISA3A0PJX4 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms