Protein–RNA interactions for Protein: Q9Y5F3

PCDHB1, Protocadherin beta-1, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB1Q9Y5F3 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHB1Q9Y5F3 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC17.11■□□□□ 0.33
PCDHB1Q9Y5F3 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHB1Q9Y5F3 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC17.11■□□□□ 0.33
PCDHB1Q9Y5F3 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHB1Q9Y5F3 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHB1Q9Y5F3 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
PCDHB1Q9Y5F3 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHB1Q9Y5F3 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
PCDHB1Q9Y5F3 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHB1Q9Y5F3 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
PCDHB1Q9Y5F3 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHB1Q9Y5F3 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHB1Q9Y5F3 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHB1Q9Y5F3 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHB1Q9Y5F3 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC17.11■□□□□ 0.33
PCDHB1Q9Y5F3 CRCP-205ENST00000431089 942 ntTSL 2 BASIC17.11■□□□□ 0.33
PCDHB1Q9Y5F3 AC009947.1-201ENST00000444350 727 ntBASIC17.11■□□□□ 0.33
PCDHB1Q9Y5F3 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC17.11■□□□□ 0.33
PCDHB1Q9Y5F3 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC17.11■□□□□ 0.33
PCDHB1Q9Y5F3 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC17.11■□□□□ 0.33
PCDHB1Q9Y5F3 BX005266.1-201ENST00000473402 457 ntBASIC17.11■□□□□ 0.33
PCDHB1Q9Y5F3 S100A2-206ENST00000497140 697 ntTSL 2 BASIC17.11■□□□□ 0.33
PCDHB1Q9Y5F3 MSRA-206ENST00000521209 814 ntTSL 3 BASIC17.11■□□□□ 0.33
PCDHB1Q9Y5F3 AC124947.2-201ENST00000547118 1133 ntBASIC17.11■□□□□ 0.33
PCDHB1Q9Y5F3 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC17.11■□□□□ 0.33
PCDHB1Q9Y5F3 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC17.11■□□□□ 0.33
PCDHB1Q9Y5F3 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
PCDHB1Q9Y5F3 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHB1Q9Y5F3 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC17.11■□□□□ 0.33
PCDHB1Q9Y5F3 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC17.11■□□□□ 0.33
PCDHB1Q9Y5F3 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHB1Q9Y5F3 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC17.11■□□□□ 0.33
PCDHB1Q9Y5F3 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC17.11■□□□□ 0.33
PCDHB1Q9Y5F3 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC17.11■□□□□ 0.33
PCDHB1Q9Y5F3 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC17.11■□□□□ 0.33
PCDHB1Q9Y5F3 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHB1Q9Y5F3 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHB1Q9Y5F3 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHB1Q9Y5F3 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHB1Q9Y5F3 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHB1Q9Y5F3 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHB1Q9Y5F3 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC17.1■□□□□ 0.33
PCDHB1Q9Y5F3 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHB1Q9Y5F3 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHB1Q9Y5F3 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHB1Q9Y5F3 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHB1Q9Y5F3 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHB1Q9Y5F3 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
PCDHB1Q9Y5F3 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC17.1■□□□□ 0.33
PCDHB1Q9Y5F3 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHB1Q9Y5F3 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHB1Q9Y5F3 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHB1Q9Y5F3 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHB1Q9Y5F3 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHB1Q9Y5F3 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHB1Q9Y5F3 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHB1Q9Y5F3 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHB1Q9Y5F3 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC17.1■□□□□ 0.33
PCDHB1Q9Y5F3 LAGE3P1-201ENST00000425356 484 ntBASIC17.1■□□□□ 0.33
PCDHB1Q9Y5F3 AC004832.2-201ENST00000426397 482 ntBASIC17.1■□□□□ 0.33
PCDHB1Q9Y5F3 DNAJB3-202ENST00000449667 1266 ntBASIC17.1■□□□□ 0.33
PCDHB1Q9Y5F3 PRYP5-201ENST00000451909 266 ntBASIC17.1■□□□□ 0.33
PCDHB1Q9Y5F3 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
PCDHB1Q9Y5F3 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC17.1■□□□□ 0.33
PCDHB1Q9Y5F3 AC002347.1-201ENST00000569543 541 ntBASIC17.1■□□□□ 0.33
PCDHB1Q9Y5F3 CYGB-205ENST00000590175 830 ntTSL 3 BASIC17.1■□□□□ 0.33
PCDHB1Q9Y5F3 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC17.1■□□□□ 0.33
PCDHB1Q9Y5F3 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHB1Q9Y5F3 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
PCDHB1Q9Y5F3 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHB1Q9Y5F3 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHB1Q9Y5F3 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHB1Q9Y5F3 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHB1Q9Y5F3 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHB1Q9Y5F3 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC17.1■□□□□ 0.33
PCDHB1Q9Y5F3 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC17.1■□□□□ 0.33
PCDHB1Q9Y5F3 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHB1Q9Y5F3 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PCDHB1Q9Y5F3 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC17.09■□□□□ 0.33
PCDHB1Q9Y5F3 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PCDHB1Q9Y5F3 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PCDHB1Q9Y5F3 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
PCDHB1Q9Y5F3 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PCDHB1Q9Y5F3 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC17.09■□□□□ 0.33
PCDHB1Q9Y5F3 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC17.09■□□□□ 0.33
PCDHB1Q9Y5F3 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
PCDHB1Q9Y5F3 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PCDHB1Q9Y5F3 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PCDHB1Q9Y5F3 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC17.09■□□□□ 0.33
PCDHB1Q9Y5F3 COPE-211ENST00000600932 1144 ntTSL 5 BASIC17.09■□□□□ 0.33
PCDHB1Q9Y5F3 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
PCDHB1Q9Y5F3 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PCDHB1Q9Y5F3 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
PCDHB1Q9Y5F3 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PCDHB1Q9Y5F3 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PCDHB1Q9Y5F3 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC17.09■□□□□ 0.33
PCDHB1Q9Y5F3 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC17.09■□□□□ 0.33
PCDHB1Q9Y5F3 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
PCDHB1Q9Y5F3 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms