Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS4AQ9UN37 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS4AQ9UN37 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS4AQ9UN37 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC16.61■□□□□ 0.25
VPS4AQ9UN37 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC16.61■□□□□ 0.25
VPS4AQ9UN37 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
VPS4AQ9UN37 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS4AQ9UN37 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC16.61■□□□□ 0.25
VPS4AQ9UN37 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
VPS4AQ9UN37 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
VPS4AQ9UN37 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC16.61■□□□□ 0.25
VPS4AQ9UN37 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
VPS4AQ9UN37 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VPS4AQ9UN37 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
VPS4AQ9UN37 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
VPS4AQ9UN37 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS4AQ9UN37 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS4AQ9UN37 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS4AQ9UN37 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
VPS4AQ9UN37 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
VPS4AQ9UN37 TBC1D3P5-201ENST00000579401 1545 ntBASIC16.6■□□□□ 0.25
VPS4AQ9UN37 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC16.6■□□□□ 0.25
VPS4AQ9UN37 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS4AQ9UN37 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VPS4AQ9UN37 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS4AQ9UN37 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC16.6■□□□□ 0.25
VPS4AQ9UN37 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC16.6■□□□□ 0.25
VPS4AQ9UN37 ADM-208ENST00000534464 1640 ntTSL 2 BASIC16.6■□□□□ 0.25
VPS4AQ9UN37 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
VPS4AQ9UN37 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS4AQ9UN37 CES3-203ENST00000543856 3178 ntTSL 2 BASIC16.6■□□□□ 0.25
VPS4AQ9UN37 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS4AQ9UN37 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VPS4AQ9UN37 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC16.6■□□□□ 0.25
VPS4AQ9UN37 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS4AQ9UN37 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS4AQ9UN37 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC16.6■□□□□ 0.25
VPS4AQ9UN37 THAP5-204ENST00000438865 868 ntTSL 2 BASIC16.6■□□□□ 0.25
VPS4AQ9UN37 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
VPS4AQ9UN37 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC16.6■□□□□ 0.25
VPS4AQ9UN37 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS4AQ9UN37 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC16.6■□□□□ 0.25
VPS4AQ9UN37 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VPS4AQ9UN37 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS4AQ9UN37 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS4AQ9UN37 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS4AQ9UN37 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS4AQ9UN37 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC16.6■□□□□ 0.25
VPS4AQ9UN37 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VPS4AQ9UN37 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC16.6■□□□□ 0.25
VPS4AQ9UN37 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC16.6■□□□□ 0.25
VPS4AQ9UN37 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS4AQ9UN37 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS4AQ9UN37 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS4AQ9UN37 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS4AQ9UN37 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC16.6■□□□□ 0.25
VPS4AQ9UN37 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC16.6■□□□□ 0.25
VPS4AQ9UN37 PC-208ENST00000529047 1607 ntTSL 3 BASIC16.59■□□□□ 0.25
VPS4AQ9UN37 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
VPS4AQ9UN37 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS4AQ9UN37 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC16.59■□□□□ 0.25
VPS4AQ9UN37 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS4AQ9UN37 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC16.59■□□□□ 0.25
VPS4AQ9UN37 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS4AQ9UN37 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
VPS4AQ9UN37 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS4AQ9UN37 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC16.59■□□□□ 0.25
VPS4AQ9UN37 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
VPS4AQ9UN37 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS4AQ9UN37 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS4AQ9UN37 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS4AQ9UN37 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS4AQ9UN37 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VPS4AQ9UN37 HMGN1P19-201ENST00000436976 333 ntBASIC16.59■□□□□ 0.25
VPS4AQ9UN37 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC16.59■□□□□ 0.25
VPS4AQ9UN37 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC16.59■□□□□ 0.25
VPS4AQ9UN37 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
VPS4AQ9UN37 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC16.59■□□□□ 0.25
VPS4AQ9UN37 AC002558.1-201ENST00000488906 803 ntBASIC16.59■□□□□ 0.25
VPS4AQ9UN37 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS4AQ9UN37 RPL18-209ENST00000550645 463 ntTSL 5 BASIC16.59■□□□□ 0.25
VPS4AQ9UN37 RPL18-214ENST00000552588 559 ntTSL 3 BASIC16.59■□□□□ 0.25
VPS4AQ9UN37 AP005901.3-202ENST00000581653 237 ntBASIC16.59■□□□□ 0.25
VPS4AQ9UN37 TMED1-207ENST00000591695 809 ntTSL 5 BASIC16.59■□□□□ 0.25
VPS4AQ9UN37 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC16.59■□□□□ 0.25
VPS4AQ9UN37 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VPS4AQ9UN37 AC079781.4-201ENST00000641908 219 ntBASIC16.59■□□□□ 0.25
VPS4AQ9UN37 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
VPS4AQ9UN37 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC16.59■□□□□ 0.25
VPS4AQ9UN37 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VPS4AQ9UN37 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC16.59■□□□□ 0.25
VPS4AQ9UN37 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS4AQ9UN37 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC16.59■□□□□ 0.25
VPS4AQ9UN37 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VPS4AQ9UN37 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS4AQ9UN37 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC16.59■□□□□ 0.25
VPS4AQ9UN37 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS4AQ9UN37 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS4AQ9UN37 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
VPS4AQ9UN37 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 83.9 ms