Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIMD1Q9UGP4 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
LIMD1Q9UGP4 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIMD1Q9UGP4 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIMD1Q9UGP4 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIMD1Q9UGP4 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC17.82■□□□□ 0.44
LIMD1Q9UGP4 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIMD1Q9UGP4 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LIMD1Q9UGP4 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC17.82■□□□□ 0.44
LIMD1Q9UGP4 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LIMD1Q9UGP4 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC17.82■□□□□ 0.44
LIMD1Q9UGP4 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LIMD1Q9UGP4 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
LIMD1Q9UGP4 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LIMD1Q9UGP4 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC17.82■□□□□ 0.44
LIMD1Q9UGP4 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIMD1Q9UGP4 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIMD1Q9UGP4 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC17.82■□□□□ 0.44
LIMD1Q9UGP4 KRT18P32-201ENST00000424695 1287 ntBASIC17.82■□□□□ 0.44
LIMD1Q9UGP4 KLF2P3-201ENST00000451977 1087 ntBASIC17.82■□□□□ 0.44
LIMD1Q9UGP4 AC002558.1-201ENST00000488906 803 ntBASIC17.82■□□□□ 0.44
LIMD1Q9UGP4 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIMD1Q9UGP4 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC17.82■□□□□ 0.44
LIMD1Q9UGP4 AL512356.2-201ENST00000546955 174 ntBASIC17.82■□□□□ 0.44
LIMD1Q9UGP4 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LIMD1Q9UGP4 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC17.82■□□□□ 0.44
LIMD1Q9UGP4 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC17.82■□□□□ 0.44
LIMD1Q9UGP4 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC17.82■□□□□ 0.44
LIMD1Q9UGP4 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
LIMD1Q9UGP4 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC17.82■□□□□ 0.44
LIMD1Q9UGP4 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIMD1Q9UGP4 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC17.82■□□□□ 0.44
LIMD1Q9UGP4 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIMD1Q9UGP4 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIMD1Q9UGP4 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIMD1Q9UGP4 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIMD1Q9UGP4 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC17.82■□□□□ 0.44
LIMD1Q9UGP4 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIMD1Q9UGP4 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
LIMD1Q9UGP4 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC17.81■□□□□ 0.44
LIMD1Q9UGP4 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
LIMD1Q9UGP4 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
LIMD1Q9UGP4 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC17.81■□□□□ 0.44
LIMD1Q9UGP4 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIMD1Q9UGP4 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIMD1Q9UGP4 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIMD1Q9UGP4 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC17.81■□□□□ 0.44
LIMD1Q9UGP4 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIMD1Q9UGP4 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC17.81■□□□□ 0.44
LIMD1Q9UGP4 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
LIMD1Q9UGP4 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIMD1Q9UGP4 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
LIMD1Q9UGP4 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIMD1Q9UGP4 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIMD1Q9UGP4 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC17.81■□□□□ 0.44
LIMD1Q9UGP4 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC17.81■□□□□ 0.44
LIMD1Q9UGP4 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC17.81■□□□□ 0.44
LIMD1Q9UGP4 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC17.81■□□□□ 0.44
LIMD1Q9UGP4 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC17.81■□□□□ 0.44
LIMD1Q9UGP4 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC17.81■□□□□ 0.44
LIMD1Q9UGP4 TSFM-210ENST00000550559 897 ntTSL 5 BASIC17.81■□□□□ 0.44
LIMD1Q9UGP4 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC17.81■□□□□ 0.44
LIMD1Q9UGP4 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC17.81■□□□□ 0.44
LIMD1Q9UGP4 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIMD1Q9UGP4 YTHDF3-AS1-201ENST00000603538 718 ntBASIC17.81■□□□□ 0.44
LIMD1Q9UGP4 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC17.81■□□□□ 0.44
LIMD1Q9UGP4 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC17.81■□□□□ 0.44
LIMD1Q9UGP4 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIMD1Q9UGP4 FLYWCH1P1-201ENST00000460917 1874 ntBASIC17.81■□□□□ 0.44
LIMD1Q9UGP4 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
LIMD1Q9UGP4 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC17.81■□□□□ 0.44
LIMD1Q9UGP4 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIMD1Q9UGP4 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC17.81■□□□□ 0.44
LIMD1Q9UGP4 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIMD1Q9UGP4 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIMD1Q9UGP4 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC17.81■□□□□ 0.44
LIMD1Q9UGP4 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIMD1Q9UGP4 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC17.8■□□□□ 0.44
LIMD1Q9UGP4 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LIMD1Q9UGP4 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LIMD1Q9UGP4 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LIMD1Q9UGP4 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
LIMD1Q9UGP4 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LIMD1Q9UGP4 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC17.8■□□□□ 0.44
LIMD1Q9UGP4 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
LIMD1Q9UGP4 RPL30-202ENST00000396070 440 ntTSL 2 BASIC17.8■□□□□ 0.44
LIMD1Q9UGP4 AC140658.5-201ENST00000438532 169 ntBASIC17.8■□□□□ 0.44
LIMD1Q9UGP4 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
LIMD1Q9UGP4 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
LIMD1Q9UGP4 CCDC74BP1-201ENST00000508880 1123 ntBASIC17.8■□□□□ 0.44
LIMD1Q9UGP4 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC17.8■□□□□ 0.44
LIMD1Q9UGP4 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC17.8■□□□□ 0.44
LIMD1Q9UGP4 AC243562.1-201ENST00000560672 389 ntBASIC17.8■□□□□ 0.44
LIMD1Q9UGP4 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LIMD1Q9UGP4 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC17.8■□□□□ 0.44
LIMD1Q9UGP4 AP001059.3-201ENST00000619053 235 ntBASIC17.8■□□□□ 0.44
LIMD1Q9UGP4 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LIMD1Q9UGP4 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC17.8■□□□□ 0.44
LIMD1Q9UGP4 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
LIMD1Q9UGP4 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC17.8■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 46.7 ms