Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TRIM39Q9HCM9 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
TRIM39Q9HCM9 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
TRIM39Q9HCM9 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
TRIM39Q9HCM9 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
TRIM39Q9HCM9 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC16.98■□□□□ 0.31
TRIM39Q9HCM9 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TRIM39Q9HCM9 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TRIM39Q9HCM9 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
TRIM39Q9HCM9 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
TRIM39Q9HCM9 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
TRIM39Q9HCM9 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
TRIM39Q9HCM9 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
TRIM39Q9HCM9 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
TRIM39Q9HCM9 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
TRIM39Q9HCM9 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC16.97■□□□□ 0.31
TRIM39Q9HCM9 METTL26-205ENST00000397666 726 ntTSL 2 BASIC16.97■□□□□ 0.31
TRIM39Q9HCM9 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
TRIM39Q9HCM9 AP000347.1-202ENST00000435868 847 ntBASIC16.97■□□□□ 0.31
TRIM39Q9HCM9 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC16.97■□□□□ 0.31
TRIM39Q9HCM9 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC16.97■□□□□ 0.31
TRIM39Q9HCM9 AC108751.1-201ENST00000490852 363 ntBASIC16.97■□□□□ 0.31
TRIM39Q9HCM9 AC034105.1-201ENST00000563488 319 ntBASIC16.97■□□□□ 0.31
TRIM39Q9HCM9 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC16.97■□□□□ 0.31
TRIM39Q9HCM9 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC16.97■□□□□ 0.31
TRIM39Q9HCM9 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC16.97■□□□□ 0.31
TRIM39Q9HCM9 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
TRIM39Q9HCM9 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
TRIM39Q9HCM9 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
TRIM39Q9HCM9 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
TRIM39Q9HCM9 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC16.97■□□□□ 0.31
TRIM39Q9HCM9 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
TRIM39Q9HCM9 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
TRIM39Q9HCM9 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC16.97■□□□□ 0.31
TRIM39Q9HCM9 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
TRIM39Q9HCM9 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
TRIM39Q9HCM9 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
TRIM39Q9HCM9 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
TRIM39Q9HCM9 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
TRIM39Q9HCM9 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC16.96■□□□□ 0.31
TRIM39Q9HCM9 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
TRIM39Q9HCM9 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
TRIM39Q9HCM9 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
TRIM39Q9HCM9 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
TRIM39Q9HCM9 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
TRIM39Q9HCM9 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
TRIM39Q9HCM9 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
TRIM39Q9HCM9 PP12613-201ENST00000424958 2230 ntBASIC16.96■□□□□ 0.31
TRIM39Q9HCM9 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.31
TRIM39Q9HCM9 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC16.96■□□□□ 0.31
TRIM39Q9HCM9 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
TRIM39Q9HCM9 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
TRIM39Q9HCM9 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC16.96■□□□□ 0.31
TRIM39Q9HCM9 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
TRIM39Q9HCM9 SLC25A1P3-201ENST00000395415 828 ntBASIC16.96■□□□□ 0.31
TRIM39Q9HCM9 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
TRIM39Q9HCM9 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC16.96■□□□□ 0.31
TRIM39Q9HCM9 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
TRIM39Q9HCM9 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC16.96■□□□□ 0.31
TRIM39Q9HCM9 CAND2-206ENST00000626378 333 ntTSL 5 BASIC16.96■□□□□ 0.31
TRIM39Q9HCM9 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
TRIM39Q9HCM9 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
TRIM39Q9HCM9 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC16.96■□□□□ 0.31
TRIM39Q9HCM9 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
TRIM39Q9HCM9 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
TRIM39Q9HCM9 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC16.96■□□□□ 0.31
TRIM39Q9HCM9 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC16.96■□□□□ 0.3
TRIM39Q9HCM9 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC16.96■□□□□ 0.3
TRIM39Q9HCM9 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
TRIM39Q9HCM9 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
TRIM39Q9HCM9 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC16.95■□□□□ 0.3
TRIM39Q9HCM9 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC16.95■□□□□ 0.3
TRIM39Q9HCM9 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC16.95■□□□□ 0.3
TRIM39Q9HCM9 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
TRIM39Q9HCM9 EGFEM1P-202ENST00000431685 1563 ntBASIC16.95■□□□□ 0.3
TRIM39Q9HCM9 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC16.95■□□□□ 0.3
TRIM39Q9HCM9 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TRIM39Q9HCM9 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC16.95■□□□□ 0.3
TRIM39Q9HCM9 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC16.95■□□□□ 0.3
TRIM39Q9HCM9 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TRIM39Q9HCM9 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC16.95■□□□□ 0.3
TRIM39Q9HCM9 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
TRIM39Q9HCM9 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC16.95■□□□□ 0.3
TRIM39Q9HCM9 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC16.95■□□□□ 0.3
TRIM39Q9HCM9 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
TRIM39Q9HCM9 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TRIM39Q9HCM9 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
TRIM39Q9HCM9 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
TRIM39Q9HCM9 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC16.95■□□□□ 0.3
TRIM39Q9HCM9 AC108073.2-201ENST00000464002 357 ntBASIC16.95■□□□□ 0.3
TRIM39Q9HCM9 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC16.95■□□□□ 0.3
TRIM39Q9HCM9 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC16.95■□□□□ 0.3
TRIM39Q9HCM9 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
TRIM39Q9HCM9 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC16.95■□□□□ 0.3
TRIM39Q9HCM9 PIN1-206ENST00000587625 878 ntTSL 2 BASIC16.95■□□□□ 0.3
TRIM39Q9HCM9 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC16.95■□□□□ 0.3
TRIM39Q9HCM9 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC16.95■□□□□ 0.3
TRIM39Q9HCM9 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
TRIM39Q9HCM9 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
TRIM39Q9HCM9 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 97 ms