Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC16.68■□□□□ 0.26
CCDC28BQ9BUN5 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC28BQ9BUN5 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC16.68■□□□□ 0.26
CCDC28BQ9BUN5 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
CCDC28BQ9BUN5 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC28BQ9BUN5 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC28BQ9BUN5 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC28BQ9BUN5 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
CCDC28BQ9BUN5 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
CCDC28BQ9BUN5 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC16.68■□□□□ 0.26
CCDC28BQ9BUN5 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC16.68■□□□□ 0.26
CCDC28BQ9BUN5 AC103564.2-201ENST00000432853 1299 ntBASIC16.68■□□□□ 0.26
CCDC28BQ9BUN5 AC092597.1-201ENST00000487352 616 ntBASIC16.68■□□□□ 0.26
CCDC28BQ9BUN5 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC28BQ9BUN5 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC16.68■□□□□ 0.26
CCDC28BQ9BUN5 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC16.68■□□□□ 0.26
CCDC28BQ9BUN5 STK25P1-201ENST00000585406 838 ntBASIC16.68■□□□□ 0.26
CCDC28BQ9BUN5 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
CCDC28BQ9BUN5 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC28BQ9BUN5 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC16.68■□□□□ 0.26
CCDC28BQ9BUN5 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC28BQ9BUN5 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC28BQ9BUN5 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC16.68■□□□□ 0.26
CCDC28BQ9BUN5 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
CCDC28BQ9BUN5 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC28BQ9BUN5 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
CCDC28BQ9BUN5 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC28BQ9BUN5 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC28BQ9BUN5 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
CCDC28BQ9BUN5 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC16.68■□□□□ 0.26
CCDC28BQ9BUN5 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC28BQ9BUN5 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC16.68■□□□□ 0.26
CCDC28BQ9BUN5 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC16.68■□□□□ 0.26
CCDC28BQ9BUN5 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC28BQ9BUN5 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC28BQ9BUN5 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC28BQ9BUN5 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC16.68■□□□□ 0.26
CCDC28BQ9BUN5 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC28BQ9BUN5 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC16.67■□□□□ 0.26
CCDC28BQ9BUN5 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC28BQ9BUN5 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
CCDC28BQ9BUN5 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
CCDC28BQ9BUN5 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC16.67■□□□□ 0.26
CCDC28BQ9BUN5 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC28BQ9BUN5 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC28BQ9BUN5 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC16.67■□□□□ 0.26
CCDC28BQ9BUN5 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC16.67■□□□□ 0.26
CCDC28BQ9BUN5 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
CCDC28BQ9BUN5 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC28BQ9BUN5 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC28BQ9BUN5 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC28BQ9BUN5 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC28BQ9BUN5 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC28BQ9BUN5 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC28BQ9BUN5 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC28BQ9BUN5 ANKRD20A18P-201ENST00000359341 492 ntBASIC16.67■□□□□ 0.26
CCDC28BQ9BUN5 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC28BQ9BUN5 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC28BQ9BUN5 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC16.67■□□□□ 0.26
CCDC28BQ9BUN5 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC16.67■□□□□ 0.26
CCDC28BQ9BUN5 MIR4497-201ENST00000583208 89 ntBASIC16.67■□□□□ 0.26
CCDC28BQ9BUN5 AC005332.3-201ENST00000589904 676 ntBASIC16.67■□□□□ 0.26
CCDC28BQ9BUN5 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC28BQ9BUN5 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC16.67■□□□□ 0.26
CCDC28BQ9BUN5 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC28BQ9BUN5 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC28BQ9BUN5 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC28BQ9BUN5 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC28BQ9BUN5 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC28BQ9BUN5 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC28BQ9BUN5 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC28BQ9BUN5 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC28BQ9BUN5 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC16.66■□□□□ 0.26
CCDC28BQ9BUN5 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC28BQ9BUN5 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC16.66■□□□□ 0.26
CCDC28BQ9BUN5 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC28BQ9BUN5 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC28BQ9BUN5 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
CCDC28BQ9BUN5 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC16.66■□□□□ 0.26
CCDC28BQ9BUN5 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC28BQ9BUN5 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC28BQ9BUN5 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC16.66■□□□□ 0.26
CCDC28BQ9BUN5 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC16.66■□□□□ 0.26
CCDC28BQ9BUN5 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC28BQ9BUN5 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
CCDC28BQ9BUN5 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC28BQ9BUN5 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC28BQ9BUN5 GXYLT1P3-201ENST00000453058 1193 ntBASIC16.66■□□□□ 0.26
CCDC28BQ9BUN5 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC28BQ9BUN5 COX11P1-201ENST00000489116 835 ntBASIC16.66■□□□□ 0.26
CCDC28BQ9BUN5 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC28BQ9BUN5 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC16.66■□□□□ 0.26
CCDC28BQ9BUN5 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC28BQ9BUN5 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC16.66■□□□□ 0.26
CCDC28BQ9BUN5 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC28BQ9BUN5 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC16.66■□□□□ 0.26
CCDC28BQ9BUN5 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC16.66■□□□□ 0.26
CCDC28BQ9BUN5 AL390719.2-201ENST00000606993 987 ntBASIC16.66■□□□□ 0.26
CCDC28BQ9BUN5 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC28BQ9BUN5 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC16.66■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms