Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC13.23□□□□□ -0.29
CCDC140Q96MF4 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC13.23□□□□□ -0.29
CCDC140Q96MF4 KRT18P27-201ENST00000427733 1299 ntBASIC13.23□□□□□ -0.29
CCDC140Q96MF4 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC13.23□□□□□ -0.29
CCDC140Q96MF4 HNRNPDP1-201ENST00000439535 754 ntBASIC13.23□□□□□ -0.29
CCDC140Q96MF4 PP7080-204ENST00000510714 601 ntTSL 3 BASIC13.23□□□□□ -0.29
CCDC140Q96MF4 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC13.23□□□□□ -0.29
CCDC140Q96MF4 AP002469.2-201ENST00000531724 424 ntBASIC13.23□□□□□ -0.29
CCDC140Q96MF4 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC13.23□□□□□ -0.29
CCDC140Q96MF4 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC13.23□□□□□ -0.29
CCDC140Q96MF4 CALM3-211ENST00000598871 561 ntTSL 4 BASIC13.23□□□□□ -0.29
CCDC140Q96MF4 TERC-201ENST00000602385 541 ntBASIC13.23□□□□□ -0.29
CCDC140Q96MF4 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC13.23□□□□□ -0.29
CCDC140Q96MF4 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
CCDC140Q96MF4 AC148477.8-201ENST00000624298 468 ntBASIC13.23□□□□□ -0.29
CCDC140Q96MF4 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
CCDC140Q96MF4 AL805961.1-202ENST00000641562 540 ntBASIC13.23□□□□□ -0.29
CCDC140Q96MF4 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
CCDC140Q96MF4 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CCDC140Q96MF4 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC13.23□□□□□ -0.29
CCDC140Q96MF4 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CCDC140Q96MF4 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CCDC140Q96MF4 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
CCDC140Q96MF4 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC13.23□□□□□ -0.29
CCDC140Q96MF4 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
CCDC140Q96MF4 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CCDC140Q96MF4 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC13.23□□□□□ -0.29
CCDC140Q96MF4 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
CCDC140Q96MF4 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
CCDC140Q96MF4 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
CCDC140Q96MF4 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CCDC140Q96MF4 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CCDC140Q96MF4 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CCDC140Q96MF4 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
CCDC140Q96MF4 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CCDC140Q96MF4 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CCDC140Q96MF4 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC13.22□□□□□ -0.29
CCDC140Q96MF4 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC13.22□□□□□ -0.29
CCDC140Q96MF4 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
CCDC140Q96MF4 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
CCDC140Q96MF4 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC13.22□□□□□ -0.29
CCDC140Q96MF4 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC13.22□□□□□ -0.29
CCDC140Q96MF4 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC13.22□□□□□ -0.29
CCDC140Q96MF4 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC13.22□□□□□ -0.29
CCDC140Q96MF4 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CCDC140Q96MF4 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
CCDC140Q96MF4 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC13.22□□□□□ -0.29
CCDC140Q96MF4 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
CCDC140Q96MF4 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC13.22□□□□□ -0.29
CCDC140Q96MF4 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CCDC140Q96MF4 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC13.22□□□□□ -0.29
CCDC140Q96MF4 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CCDC140Q96MF4 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC13.22□□□□□ -0.29
CCDC140Q96MF4 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
CCDC140Q96MF4 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
CCDC140Q96MF4 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
CCDC140Q96MF4 MED22-202ENST00000371999 987 ntTSL 3 BASIC13.22□□□□□ -0.29
CCDC140Q96MF4 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
CCDC140Q96MF4 PTCHD3P3-201ENST00000403073 906 ntBASIC13.22□□□□□ -0.29
CCDC140Q96MF4 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CCDC140Q96MF4 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC13.22□□□□□ -0.29
CCDC140Q96MF4 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CCDC140Q96MF4 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC13.22□□□□□ -0.29
CCDC140Q96MF4 MOK-208ENST00000519058 917 ntTSL 2 BASIC13.22□□□□□ -0.29
CCDC140Q96MF4 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC13.22□□□□□ -0.29
CCDC140Q96MF4 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC13.22□□□□□ -0.29
CCDC140Q96MF4 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC13.22□□□□□ -0.29
CCDC140Q96MF4 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC13.22□□□□□ -0.29
CCDC140Q96MF4 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC13.22□□□□□ -0.29
CCDC140Q96MF4 AC104692.2-201ENST00000603054 253 ntBASIC13.22□□□□□ -0.29
CCDC140Q96MF4 AC008735.5-201ENST00000623544 497 ntBASIC13.22□□□□□ -0.29
CCDC140Q96MF4 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
CCDC140Q96MF4 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
CCDC140Q96MF4 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC13.22□□□□□ -0.29
CCDC140Q96MF4 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
CCDC140Q96MF4 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
CCDC140Q96MF4 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC13.22□□□□□ -0.29
CCDC140Q96MF4 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
CCDC140Q96MF4 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
CCDC140Q96MF4 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CCDC140Q96MF4 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
CCDC140Q96MF4 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
CCDC140Q96MF4 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CCDC140Q96MF4 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC13.22□□□□□ -0.29
CCDC140Q96MF4 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
CCDC140Q96MF4 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
CCDC140Q96MF4 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
CCDC140Q96MF4 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC13.21□□□□□ -0.29
CCDC140Q96MF4 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
CCDC140Q96MF4 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.29
CCDC140Q96MF4 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC13.21□□□□□ -0.29
CCDC140Q96MF4 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CCDC140Q96MF4 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC13.21□□□□□ -0.29
CCDC140Q96MF4 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CCDC140Q96MF4 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
CCDC140Q96MF4 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC13.21□□□□□ -0.29
CCDC140Q96MF4 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.29
CCDC140Q96MF4 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
CCDC140Q96MF4 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
CCDC140Q96MF4 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC13.21□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms