Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC42Q96M95 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC42Q96M95 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC18.49■□□□□ 0.55
CCDC42Q96M95 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC18.49■□□□□ 0.55
CCDC42Q96M95 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC42Q96M95 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC42Q96M95 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC18.48■□□□□ 0.55
CCDC42Q96M95 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC18.48■□□□□ 0.55
CCDC42Q96M95 PCDHB17P-201ENST00000539533 2393 ntBASIC18.48■□□□□ 0.55
CCDC42Q96M95 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC18.48■□□□□ 0.55
CCDC42Q96M95 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC42Q96M95 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC18.48■□□□□ 0.55
CCDC42Q96M95 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC42Q96M95 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
CCDC42Q96M95 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC42Q96M95 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC18.48■□□□□ 0.55
CCDC42Q96M95 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC42Q96M95 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC42Q96M95 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC42Q96M95 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC42Q96M95 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC18.48■□□□□ 0.55
CCDC42Q96M95 MEG3-211ENST00000452514 461 ntTSL 3 BASIC18.48■□□□□ 0.55
CCDC42Q96M95 AL671277.2-201ENST00000458060 996 ntBASIC18.48■□□□□ 0.55
CCDC42Q96M95 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC18.48■□□□□ 0.55
CCDC42Q96M95 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC18.48■□□□□ 0.55
CCDC42Q96M95 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC18.48■□□□□ 0.55
CCDC42Q96M95 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC18.48■□□□□ 0.55
CCDC42Q96M95 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC18.48■□□□□ 0.55
CCDC42Q96M95 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC18.48■□□□□ 0.55
CCDC42Q96M95 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
CCDC42Q96M95 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC18.48■□□□□ 0.55
CCDC42Q96M95 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
CCDC42Q96M95 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC42Q96M95 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC42Q96M95 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC42Q96M95 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC42Q96M95 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC42Q96M95 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
CCDC42Q96M95 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC18.48■□□□□ 0.55
CCDC42Q96M95 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC42Q96M95 AC008894.3-201ENST00000624324 3103 ntBASIC18.48■□□□□ 0.55
CCDC42Q96M95 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC18.48■□□□□ 0.55
CCDC42Q96M95 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC42Q96M95 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
CCDC42Q96M95 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC42Q96M95 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC18.48■□□□□ 0.55
CCDC42Q96M95 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC18.48■□□□□ 0.55
CCDC42Q96M95 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC18.48■□□□□ 0.55
CCDC42Q96M95 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC42Q96M95 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
CCDC42Q96M95 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCDC42Q96M95 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCDC42Q96M95 AC046158.3-201ENST00000624947 2558 ntBASIC18.47■□□□□ 0.55
CCDC42Q96M95 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CCDC42Q96M95 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
CCDC42Q96M95 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCDC42Q96M95 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CCDC42Q96M95 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCDC42Q96M95 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCDC42Q96M95 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC18.47■□□□□ 0.55
CCDC42Q96M95 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCDC42Q96M95 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCDC42Q96M95 AC003669.1-201ENST00000334569 611 ntBASIC18.47■□□□□ 0.55
CCDC42Q96M95 CD9-202ENST00000382515 1229 ntTSL 5 BASIC18.47■□□□□ 0.55
CCDC42Q96M95 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
CCDC42Q96M95 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC18.47■□□□□ 0.55
CCDC42Q96M95 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCDC42Q96M95 AC063952.2-201ENST00000498792 1227 ntBASIC18.47■□□□□ 0.55
CCDC42Q96M95 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC18.47■□□□□ 0.55
CCDC42Q96M95 AC011498.5-201ENST00000592027 486 ntBASIC18.47■□□□□ 0.55
CCDC42Q96M95 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
CCDC42Q96M95 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CCDC42Q96M95 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CCDC42Q96M95 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
CCDC42Q96M95 LINC02199-201ENST00000506655 2702 ntBASIC18.47■□□□□ 0.55
CCDC42Q96M95 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CCDC42Q96M95 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCDC42Q96M95 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CCDC42Q96M95 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCDC42Q96M95 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC18.46■□□□□ 0.55
CCDC42Q96M95 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCDC42Q96M95 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
CCDC42Q96M95 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC18.46■□□□□ 0.55
CCDC42Q96M95 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC18.46■□□□□ 0.55
CCDC42Q96M95 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCDC42Q96M95 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CCDC42Q96M95 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCDC42Q96M95 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCDC42Q96M95 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC18.46■□□□□ 0.55
CCDC42Q96M95 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCDC42Q96M95 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC18.46■□□□□ 0.55
CCDC42Q96M95 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
CCDC42Q96M95 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCDC42Q96M95 STK24-203ENST00000397517 4578 ntTSL 2 BASIC18.46■□□□□ 0.55
CCDC42Q96M95 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CCDC42Q96M95 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC18.46■□□□□ 0.55
CCDC42Q96M95 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCDC42Q96M95 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CCDC42Q96M95 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC18.46■□□□□ 0.55
CCDC42Q96M95 AC104076.2-201ENST00000448912 469 ntBASIC18.46■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms