Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC88AQ3V6T2 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC20.69■□□□□ 0.9
CCDC88AQ3V6T2 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
CCDC88AQ3V6T2 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC88AQ3V6T2 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC88AQ3V6T2 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
CCDC88AQ3V6T2 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC88AQ3V6T2 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC88AQ3V6T2 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
CCDC88AQ3V6T2 PXK-206ENST00000463280 2825 ntTSL 2 BASIC20.69■□□□□ 0.9
CCDC88AQ3V6T2 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
CCDC88AQ3V6T2 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC88AQ3V6T2 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC88AQ3V6T2 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC20.69■□□□□ 0.9
CCDC88AQ3V6T2 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC88AQ3V6T2 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
CCDC88AQ3V6T2 AC009477.1-201ENST00000452936 217 ntBASIC20.69■□□□□ 0.9
CCDC88AQ3V6T2 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC20.69■□□□□ 0.9
CCDC88AQ3V6T2 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC20.69■□□□□ 0.9
CCDC88AQ3V6T2 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC20.69■□□□□ 0.9
CCDC88AQ3V6T2 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
CCDC88AQ3V6T2 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC20.68■□□□□ 0.9
CCDC88AQ3V6T2 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC88AQ3V6T2 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC88AQ3V6T2 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
CCDC88AQ3V6T2 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC88AQ3V6T2 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC88AQ3V6T2 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC88AQ3V6T2 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC88AQ3V6T2 RNU1-129P-201ENST00000384064 167 ntBASIC20.68■□□□□ 0.9
CCDC88AQ3V6T2 RN7SL837P-201ENST00000463010 287 ntBASIC20.68■□□□□ 0.9
CCDC88AQ3V6T2 U1.21-201ENST00000580816 167 ntBASIC20.68■□□□□ 0.9
CCDC88AQ3V6T2 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC20.68■□□□□ 0.9
CCDC88AQ3V6T2 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC20.68■□□□□ 0.9
CCDC88AQ3V6T2 AC008738.7-201ENST00000609744 511 ntBASIC20.68■□□□□ 0.9
CCDC88AQ3V6T2 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
CCDC88AQ3V6T2 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC20.68■□□□□ 0.9
CCDC88AQ3V6T2 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC88AQ3V6T2 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
CCDC88AQ3V6T2 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC88AQ3V6T2 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC20.67■□□□□ 0.9
CCDC88AQ3V6T2 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC88AQ3V6T2 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC20.67■□□□□ 0.9
CCDC88AQ3V6T2 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC20.67■□□□□ 0.9
CCDC88AQ3V6T2 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC20.67■□□□□ 0.9
CCDC88AQ3V6T2 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC20.67■□□□□ 0.9
CCDC88AQ3V6T2 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC20.67■□□□□ 0.9
CCDC88AQ3V6T2 AC012569.1-201ENST00000591191 1524 ntBASIC20.67■□□□□ 0.9
CCDC88AQ3V6T2 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC88AQ3V6T2 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC88AQ3V6T2 AP3S2-216ENST00000617003 1561 ntBASIC20.67■□□□□ 0.9
CCDC88AQ3V6T2 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC88AQ3V6T2 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC88AQ3V6T2 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC88AQ3V6T2 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC88AQ3V6T2 AC134043.2-201ENST00000624206 2238 ntBASIC20.67■□□□□ 0.9
CCDC88AQ3V6T2 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC88AQ3V6T2 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC20.67■□□□□ 0.9
CCDC88AQ3V6T2 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC88AQ3V6T2 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC88AQ3V6T2 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC20.67■□□□□ 0.9
CCDC88AQ3V6T2 SNX29P1-201ENST00000548357 1007 ntBASIC20.67■□□□□ 0.9
CCDC88AQ3V6T2 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC20.67■□□□□ 0.9
CCDC88AQ3V6T2 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC88AQ3V6T2 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC20.67■□□□□ 0.9
CCDC88AQ3V6T2 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC88AQ3V6T2 RNA5-8SN1-201ENST00000610460 153 ntBASIC20.67■□□□□ 0.9
CCDC88AQ3V6T2 RNA5-8SN5-202ENST00000612463 153 ntBASIC20.67■□□□□ 0.9
CCDC88AQ3V6T2 RNA5-8SN4-201ENST00000613359 153 ntBASIC20.67■□□□□ 0.9
CCDC88AQ3V6T2 RNA5-8SN5-201ENST00000619471 153 ntBASIC20.67■□□□□ 0.9
CCDC88AQ3V6T2 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC20.66■□□□□ 0.9
CCDC88AQ3V6T2 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
CCDC88AQ3V6T2 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC88AQ3V6T2 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC88AQ3V6T2 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC88AQ3V6T2 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
CCDC88AQ3V6T2 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC88AQ3V6T2 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC88AQ3V6T2 TP53TG3HP-202ENST00000569755 579 ntBASIC20.66■□□□□ 0.9
CCDC88AQ3V6T2 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC20.66■□□□□ 0.9
CCDC88AQ3V6T2 AC005412.3-201ENST00000580309 715 ntBASIC20.66■□□□□ 0.9
CCDC88AQ3V6T2 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
CCDC88AQ3V6T2 AL033527.4-201ENST00000641026 673 ntBASIC20.66■□□□□ 0.9
CCDC88AQ3V6T2 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC88AQ3V6T2 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC20.66■□□□□ 0.9
CCDC88AQ3V6T2 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC88AQ3V6T2 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC20.66■□□□□ 0.9
CCDC88AQ3V6T2 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC20.66■□□□□ 0.9
CCDC88AQ3V6T2 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
CCDC88AQ3V6T2 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC88AQ3V6T2 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC20.65■□□□□ 0.9
CCDC88AQ3V6T2 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC88AQ3V6T2 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC20.65■□□□□ 0.9
CCDC88AQ3V6T2 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC20.65■□□□□ 0.9
CCDC88AQ3V6T2 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC20.65■□□□□ 0.9
CCDC88AQ3V6T2 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC20.65■□□□□ 0.9
CCDC88AQ3V6T2 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC20.65■□□□□ 0.9
CCDC88AQ3V6T2 STOM-203ENST00000538954 1257 ntTSL 5 BASIC20.65■□□□□ 0.9
CCDC88AQ3V6T2 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC20.65■□□□□ 0.9
CCDC88AQ3V6T2 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC20.65■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 64.4 ms