Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CHD9Q3L8U1 AL133215.2-201ENST00000609242 977 ntBASIC17.85■□□□□ 0.45
CHD9Q3L8U1 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC17.85■□□□□ 0.45
CHD9Q3L8U1 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC17.85■□□□□ 0.45
CHD9Q3L8U1 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC17.85■□□□□ 0.45
CHD9Q3L8U1 SLC25A24-204ENST00000569674 2357 ntBASIC17.85■□□□□ 0.45
CHD9Q3L8U1 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
CHD9Q3L8U1 AC131009.4-201ENST00000624048 1740 ntBASIC17.85■□□□□ 0.45
CHD9Q3L8U1 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC17.85■□□□□ 0.45
CHD9Q3L8U1 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CHD9Q3L8U1 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CHD9Q3L8U1 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC17.85■□□□□ 0.45
CHD9Q3L8U1 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC17.85■□□□□ 0.45
CHD9Q3L8U1 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC17.85■□□□□ 0.45
CHD9Q3L8U1 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CHD9Q3L8U1 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC17.85■□□□□ 0.45
CHD9Q3L8U1 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CHD9Q3L8U1 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CHD9Q3L8U1 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CHD9Q3L8U1 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CHD9Q3L8U1 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CHD9Q3L8U1 BNIP3P42-201ENST00000454982 569 ntBASIC17.85■□□□□ 0.45
CHD9Q3L8U1 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CHD9Q3L8U1 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC17.85■□□□□ 0.45
CHD9Q3L8U1 BNIP3P29-201ENST00000598302 571 ntBASIC17.85■□□□□ 0.45
CHD9Q3L8U1 AC011447.5-201ENST00000616168 564 ntBASIC17.85■□□□□ 0.45
CHD9Q3L8U1 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC17.85■□□□□ 0.45
CHD9Q3L8U1 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
CHD9Q3L8U1 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
CHD9Q3L8U1 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CHD9Q3L8U1 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CHD9Q3L8U1 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CHD9Q3L8U1 PARP8-218ENST00000513738 596 ntTSL 4 BASIC17.84■□□□□ 0.45
CHD9Q3L8U1 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CHD9Q3L8U1 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC17.84■□□□□ 0.45
CHD9Q3L8U1 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC17.84■□□□□ 0.45
CHD9Q3L8U1 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CHD9Q3L8U1 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CHD9Q3L8U1 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CHD9Q3L8U1 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CHD9Q3L8U1 KRT8P44-201ENST00000441609 1350 ntBASIC17.84■□□□□ 0.45
CHD9Q3L8U1 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CHD9Q3L8U1 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
CHD9Q3L8U1 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CHD9Q3L8U1 GALT-202ENST00000450095 1280 ntTSL 2 BASIC17.84■□□□□ 0.45
CHD9Q3L8U1 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC17.84■□□□□ 0.45
CHD9Q3L8U1 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC17.84■□□□□ 0.45
CHD9Q3L8U1 AL583810.1-201ENST00000553344 1045 ntBASIC17.84■□□□□ 0.45
CHD9Q3L8U1 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
CHD9Q3L8U1 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CHD9Q3L8U1 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC17.83■□□□□ 0.45
CHD9Q3L8U1 AC068587.10-201ENST00000641210 219 ntBASIC17.83■□□□□ 0.45
CHD9Q3L8U1 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
CHD9Q3L8U1 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
CHD9Q3L8U1 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CHD9Q3L8U1 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CHD9Q3L8U1 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CHD9Q3L8U1 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CHD9Q3L8U1 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC17.83■□□□□ 0.44
CHD9Q3L8U1 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
CHD9Q3L8U1 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC17.83■□□□□ 0.44
CHD9Q3L8U1 AL139099.5-201ENST00000635274 300 ntBASIC17.83■□□□□ 0.44
CHD9Q3L8U1 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
CHD9Q3L8U1 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC17.83■□□□□ 0.44
CHD9Q3L8U1 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
CHD9Q3L8U1 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CHD9Q3L8U1 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC17.82■□□□□ 0.44
CHD9Q3L8U1 CD81-207ENST00000481687 890 ntTSL 2 BASIC17.82■□□□□ 0.44
CHD9Q3L8U1 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC17.82■□□□□ 0.44
CHD9Q3L8U1 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC17.82■□□□□ 0.44
CHD9Q3L8U1 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CHD9Q3L8U1 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CHD9Q3L8U1 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC17.82■□□□□ 0.44
CHD9Q3L8U1 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CHD9Q3L8U1 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC17.82■□□□□ 0.44
CHD9Q3L8U1 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC17.82■□□□□ 0.44
CHD9Q3L8U1 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CHD9Q3L8U1 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC17.82■□□□□ 0.44
CHD9Q3L8U1 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CHD9Q3L8U1 AC087499.6-201ENST00000411576 835 ntBASIC17.82■□□□□ 0.44
CHD9Q3L8U1 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC17.82■□□□□ 0.44
CHD9Q3L8U1 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC17.82■□□□□ 0.44
CHD9Q3L8U1 CD74-212ENST00000524315 584 ntTSL 5 BASIC17.82■□□□□ 0.44
CHD9Q3L8U1 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC17.82■□□□□ 0.44
CHD9Q3L8U1 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
CHD9Q3L8U1 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC17.82■□□□□ 0.44
CHD9Q3L8U1 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
CHD9Q3L8U1 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CHD9Q3L8U1 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CHD9Q3L8U1 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
CHD9Q3L8U1 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CHD9Q3L8U1 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
CHD9Q3L8U1 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CHD9Q3L8U1 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
CHD9Q3L8U1 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CHD9Q3L8U1 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
CHD9Q3L8U1 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CHD9Q3L8U1 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CHD9Q3L8U1 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
CHD9Q3L8U1 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC17.81■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms