Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC16.83■□□□□ 0.28
PKNOX1P55347 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
PKNOX1P55347 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PKNOX1P55347 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC16.83■□□□□ 0.28
PKNOX1P55347 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
PKNOX1P55347 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PKNOX1P55347 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PKNOX1P55347 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC16.83■□□□□ 0.28
PKNOX1P55347 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
PKNOX1P55347 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PKNOX1P55347 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PKNOX1P55347 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PKNOX1P55347 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PKNOX1P55347 HYMAI-201ENST00000635591 3347 ntBASIC16.83■□□□□ 0.28
PKNOX1P55347 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PKNOX1P55347 AL391005.1-201ENST00000623953 2435 ntBASIC16.82■□□□□ 0.28
PKNOX1P55347 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PKNOX1P55347 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC16.82■□□□□ 0.28
PKNOX1P55347 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PKNOX1P55347 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC16.82■□□□□ 0.28
PKNOX1P55347 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
PKNOX1P55347 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC16.82■□□□□ 0.28
PKNOX1P55347 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PKNOX1P55347 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PKNOX1P55347 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PKNOX1P55347 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PKNOX1P55347 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PKNOX1P55347 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PKNOX1P55347 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC16.82■□□□□ 0.28
PKNOX1P55347 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC16.82■□□□□ 0.28
PKNOX1P55347 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PKNOX1P55347 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PKNOX1P55347 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PKNOX1P55347 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC16.82■□□□□ 0.28
PKNOX1P55347 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC16.82■□□□□ 0.28
PKNOX1P55347 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC16.82■□□□□ 0.28
PKNOX1P55347 TMPOP1-202ENST00000424642 1267 ntBASIC16.82■□□□□ 0.28
PKNOX1P55347 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC16.82■□□□□ 0.28
PKNOX1P55347 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC16.82■□□□□ 0.28
PKNOX1P55347 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PKNOX1P55347 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PKNOX1P55347 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC16.82■□□□□ 0.28
PKNOX1P55347 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PKNOX1P55347 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
PKNOX1P55347 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PKNOX1P55347 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
PKNOX1P55347 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PKNOX1P55347 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
PKNOX1P55347 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PKNOX1P55347 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PKNOX1P55347 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PKNOX1P55347 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PKNOX1P55347 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PKNOX1P55347 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PKNOX1P55347 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
PKNOX1P55347 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PKNOX1P55347 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PKNOX1P55347 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
PKNOX1P55347 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PKNOX1P55347 PCDHB17P-201ENST00000539533 2393 ntBASIC16.81■□□□□ 0.28
PKNOX1P55347 AC009336.1-201ENST00000608941 1553 ntBASIC16.81■□□□□ 0.28
PKNOX1P55347 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PKNOX1P55347 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PKNOX1P55347 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
PKNOX1P55347 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC16.81■□□□□ 0.28
PKNOX1P55347 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PKNOX1P55347 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC16.81■□□□□ 0.28
PKNOX1P55347 PGR-209ENST00000617858 2816 ntTSL 5 BASIC16.81■□□□□ 0.28
PKNOX1P55347 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
PKNOX1P55347 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
PKNOX1P55347 AC132872.4-202ENST00000622924 2756 ntBASIC16.81■□□□□ 0.28
PKNOX1P55347 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
PKNOX1P55347 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PKNOX1P55347 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
PKNOX1P55347 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC16.81■□□□□ 0.28
PKNOX1P55347 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC16.81■□□□□ 0.28
PKNOX1P55347 CCS-201ENST00000310190 942 ntTSL 5 BASIC16.81■□□□□ 0.28
PKNOX1P55347 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PKNOX1P55347 AC003669.1-201ENST00000334569 611 ntBASIC16.81■□□□□ 0.28
PKNOX1P55347 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PKNOX1P55347 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC16.81■□□□□ 0.28
PKNOX1P55347 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
PKNOX1P55347 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
PKNOX1P55347 STK19B-204ENST00000512515 211 ntBASIC16.81■□□□□ 0.28
PKNOX1P55347 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC16.81■□□□□ 0.28
PKNOX1P55347 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC16.81■□□□□ 0.28
PKNOX1P55347 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC16.81■□□□□ 0.28
PKNOX1P55347 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC16.81■□□□□ 0.28
PKNOX1P55347 AC011467.2-201ENST00000598425 242 ntBASIC16.81■□□□□ 0.28
PKNOX1P55347 AL121672.3-201ENST00000608644 468 ntBASIC16.81■□□□□ 0.28
PKNOX1P55347 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
PKNOX1P55347 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC16.81■□□□□ 0.28
PKNOX1P55347 AL121956.5-201ENST00000625261 221 ntBASIC16.81■□□□□ 0.28
PKNOX1P55347 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC16.81■□□□□ 0.28
PKNOX1P55347 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
PKNOX1P55347 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PKNOX1P55347 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PKNOX1P55347 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC16.81■□□□□ 0.28
PKNOX1P55347 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PKNOX1P55347 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC16.81■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms