Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
FOXA1P55317 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
FOXA1P55317 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
FOXA1P55317 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
FOXA1P55317 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
FOXA1P55317 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
FOXA1P55317 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
FOXA1P55317 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
FOXA1P55317 GCK-202ENST00000345378 2421 ntTSL 2 BASIC16.57■□□□□ 0.24
FOXA1P55317 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC16.57■□□□□ 0.24
FOXA1P55317 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
FOXA1P55317 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
FOXA1P55317 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
FOXA1P55317 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
FOXA1P55317 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC16.57■□□□□ 0.24
FOXA1P55317 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
FOXA1P55317 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC16.57■□□□□ 0.24
FOXA1P55317 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
FOXA1P55317 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
FOXA1P55317 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
FOXA1P55317 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC16.57■□□□□ 0.24
FOXA1P55317 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
FOXA1P55317 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC16.57■□□□□ 0.24
FOXA1P55317 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC16.57■□□□□ 0.24
FOXA1P55317 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC16.57■□□□□ 0.24
FOXA1P55317 AC087388.1-201ENST00000571370 1112 ntBASIC16.57■□□□□ 0.24
FOXA1P55317 IL11-204ENST00000590625 1028 ntTSL 2 BASIC16.57■□□□□ 0.24
FOXA1P55317 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC16.57■□□□□ 0.24
FOXA1P55317 AC114341.1-201ENST00000618070 349 ntBASIC16.57■□□□□ 0.24
FOXA1P55317 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC16.57■□□□□ 0.24
FOXA1P55317 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
FOXA1P55317 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
FOXA1P55317 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
FOXA1P55317 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
FOXA1P55317 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC16.57■□□□□ 0.24
FOXA1P55317 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
FOXA1P55317 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
FOXA1P55317 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
FOXA1P55317 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
FOXA1P55317 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
FOXA1P55317 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
FOXA1P55317 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
FOXA1P55317 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
FOXA1P55317 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC16.56■□□□□ 0.24
FOXA1P55317 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
FOXA1P55317 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
FOXA1P55317 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
FOXA1P55317 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
FOXA1P55317 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC16.56■□□□□ 0.24
FOXA1P55317 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
FOXA1P55317 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
FOXA1P55317 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
FOXA1P55317 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
FOXA1P55317 SPDYE21P-201ENST00000413323 827 ntBASIC16.56■□□□□ 0.24
FOXA1P55317 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
FOXA1P55317 AL020989.1-201ENST00000422979 469 ntBASIC16.56■□□□□ 0.24
FOXA1P55317 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC16.56■□□□□ 0.24
FOXA1P55317 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC16.56■□□□□ 0.24
FOXA1P55317 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
FOXA1P55317 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
FOXA1P55317 AL391256.1-201ENST00000443260 1855 ntBASIC16.56■□□□□ 0.24
FOXA1P55317 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
FOXA1P55317 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
FOXA1P55317 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
FOXA1P55317 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC16.56■□□□□ 0.24
FOXA1P55317 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
FOXA1P55317 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
FOXA1P55317 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
FOXA1P55317 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
FOXA1P55317 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
FOXA1P55317 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
FOXA1P55317 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC16.55■□□□□ 0.24
FOXA1P55317 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
FOXA1P55317 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
FOXA1P55317 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC16.55■□□□□ 0.24
FOXA1P55317 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
FOXA1P55317 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
FOXA1P55317 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
FOXA1P55317 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
FOXA1P55317 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC16.55■□□□□ 0.24
FOXA1P55317 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC16.55■□□□□ 0.24
FOXA1P55317 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
FOXA1P55317 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
FOXA1P55317 ACTG1P4-201ENST00000425123 1122 ntBASIC16.55■□□□□ 0.24
FOXA1P55317 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC16.55■□□□□ 0.24
FOXA1P55317 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC16.55■□□□□ 0.24
FOXA1P55317 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
FOXA1P55317 SIGLEC30P-201ENST00000455569 941 ntBASIC16.55■□□□□ 0.24
FOXA1P55317 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC16.55■□□□□ 0.24
FOXA1P55317 NPAP1P7-201ENST00000613027 823 ntBASIC16.55■□□□□ 0.24
FOXA1P55317 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
FOXA1P55317 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC16.55■□□□□ 0.24
FOXA1P55317 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
FOXA1P55317 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
FOXA1P55317 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC16.55■□□□□ 0.24
FOXA1P55317 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
FOXA1P55317 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
FOXA1P55317 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
FOXA1P55317 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
FOXA1P55317 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms