Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDH6P55285 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDH6P55285 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CDH6P55285 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDH6P55285 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC17.81■□□□□ 0.44
CDH6P55285 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC17.81■□□□□ 0.44
CDH6P55285 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC17.81■□□□□ 0.44
CDH6P55285 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC17.81■□□□□ 0.44
CDH6P55285 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC17.81■□□□□ 0.44
CDH6P55285 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC17.81■□□□□ 0.44
CDH6P55285 AC008608.2-201ENST00000606089 416 ntBASIC17.81■□□□□ 0.44
CDH6P55285 AL355877.3-201ENST00000622820 899 ntBASIC17.81■□□□□ 0.44
CDH6P55285 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC17.81■□□□□ 0.44
CDH6P55285 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
CDH6P55285 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDH6P55285 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDH6P55285 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
CDH6P55285 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CDH6P55285 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CDH6P55285 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
CDH6P55285 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDH6P55285 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
CDH6P55285 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC17.8■□□□□ 0.44
CDH6P55285 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CDH6P55285 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC17.8■□□□□ 0.44
CDH6P55285 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
CDH6P55285 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDH6P55285 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDH6P55285 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CDH6P55285 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDH6P55285 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CDH6P55285 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC17.8■□□□□ 0.44
CDH6P55285 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC17.8■□□□□ 0.44
CDH6P55285 AC064862.7-201ENST00000604520 867 ntBASIC17.8■□□□□ 0.44
CDH6P55285 REXO1L6P-202ENST00000619970 1078 ntBASIC17.8■□□□□ 0.44
CDH6P55285 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDH6P55285 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC17.8■□□□□ 0.44
CDH6P55285 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDH6P55285 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC17.8■□□□□ 0.44
CDH6P55285 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC17.8■□□□□ 0.44
CDH6P55285 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC17.8■□□□□ 0.44
CDH6P55285 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC17.8■□□□□ 0.44
CDH6P55285 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC17.8■□□□□ 0.44
CDH6P55285 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC17.8■□□□□ 0.44
CDH6P55285 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
CDH6P55285 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CDH6P55285 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC17.8■□□□□ 0.44
CDH6P55285 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
CDH6P55285 PAN3-AS1-201ENST00000563843 1351 ntBASIC17.79■□□□□ 0.44
CDH6P55285 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CDH6P55285 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CDH6P55285 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC17.79■□□□□ 0.44
CDH6P55285 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CDH6P55285 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CDH6P55285 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
CDH6P55285 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
CDH6P55285 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CDH6P55285 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CDH6P55285 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
CDH6P55285 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CDH6P55285 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC17.79■□□□□ 0.44
CDH6P55285 FGFR3P6-201ENST00000457012 610 ntBASIC17.79■□□□□ 0.44
CDH6P55285 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CDH6P55285 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC17.79■□□□□ 0.44
CDH6P55285 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC17.79■□□□□ 0.44
CDH6P55285 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC17.79■□□□□ 0.44
CDH6P55285 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC17.79■□□□□ 0.44
CDH6P55285 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
CDH6P55285 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
CDH6P55285 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC17.79■□□□□ 0.44
CDH6P55285 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CDH6P55285 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
CDH6P55285 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
CDH6P55285 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
CDH6P55285 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
CDH6P55285 NCF1C-201ENST00000438382 1427 ntBASIC17.79■□□□□ 0.44
CDH6P55285 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CDH6P55285 RNF216P1-203ENST00000404404 2427 ntBASIC17.79■□□□□ 0.44
CDH6P55285 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
CDH6P55285 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CDH6P55285 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CDH6P55285 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CDH6P55285 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC17.78■□□□□ 0.44
CDH6P55285 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CDH6P55285 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CDH6P55285 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CDH6P55285 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CDH6P55285 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CDH6P55285 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
CDH6P55285 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
CDH6P55285 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CDH6P55285 CA12-203ENST00000422263 2556 ntTSL 2 BASIC17.78■□□□□ 0.44
CDH6P55285 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CDH6P55285 AKR1C7P-201ENST00000305623 895 ntBASIC17.78■□□□□ 0.44
CDH6P55285 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CDH6P55285 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CDH6P55285 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CDH6P55285 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
CDH6P55285 SART3-203ENST00000546611 1184 ntBASIC17.78■□□□□ 0.44
CDH6P55285 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC17.78■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms