Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 TOP3BP1-201ENST00000420768 1380 ntBASIC19.62■□□□□ 0.73
HMGCS2P54868 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC19.62■□□□□ 0.73
HMGCS2P54868 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HMGCS2P54868 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HMGCS2P54868 VMA21-202ENST00000370361 693 ntTSL 5 BASIC19.62■□□□□ 0.73
HMGCS2P54868 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
HMGCS2P54868 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
HMGCS2P54868 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
HMGCS2P54868 AC015922.1-201ENST00000421102 1152 ntBASIC19.62■□□□□ 0.73
HMGCS2P54868 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC19.62■□□□□ 0.73
HMGCS2P54868 OARD1-208ENST00000469104 704 ntTSL 2 BASIC19.62■□□□□ 0.73
HMGCS2P54868 POLD4-211ENST00000539074 714 ntTSL 3 BASIC19.62■□□□□ 0.73
HMGCS2P54868 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HMGCS2P54868 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC19.62■□□□□ 0.73
HMGCS2P54868 SSH2-211ENST00000590153 570 ntTSL 4 BASIC19.62■□□□□ 0.73
HMGCS2P54868 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC19.62■□□□□ 0.73
HMGCS2P54868 AC008267.7-201ENST00000624570 1194 ntBASIC19.62■□□□□ 0.73
HMGCS2P54868 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC19.62■□□□□ 0.73
HMGCS2P54868 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
HMGCS2P54868 AF228730.6-201ENST00000641497 218 ntBASIC19.62■□□□□ 0.73
HMGCS2P54868 AC084121.3-201ENST00000641716 218 ntBASIC19.62■□□□□ 0.73
HMGCS2P54868 AC105233.6-201ENST00000642093 218 ntBASIC19.62■□□□□ 0.73
HMGCS2P54868 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
HMGCS2P54868 HARS-204ENST00000438307 1789 ntTSL 2 BASIC19.62■□□□□ 0.73
HMGCS2P54868 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HMGCS2P54868 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HMGCS2P54868 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC19.61■□□□□ 0.73
HMGCS2P54868 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
HMGCS2P54868 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
HMGCS2P54868 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HMGCS2P54868 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
HMGCS2P54868 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC19.61■□□□□ 0.73
HMGCS2P54868 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
HMGCS2P54868 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
HMGCS2P54868 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
HMGCS2P54868 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HMGCS2P54868 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HMGCS2P54868 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC19.61■□□□□ 0.73
HMGCS2P54868 SLC25A6P5-201ENST00000435663 894 ntBASIC19.61■□□□□ 0.73
HMGCS2P54868 PPP6R2P1-201ENST00000450880 1275 ntBASIC19.61■□□□□ 0.73
HMGCS2P54868 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
HMGCS2P54868 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC19.61■□□□□ 0.73
HMGCS2P54868 ALG1L8P-201ENST00000533887 760 ntBASIC19.61■□□□□ 0.73
HMGCS2P54868 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC19.61■□□□□ 0.73
HMGCS2P54868 AP000842.3-202ENST00000569238 1080 ntBASIC19.61■□□□□ 0.73
HMGCS2P54868 AC091167.2-201ENST00000579581 588 ntBASIC19.61■□□□□ 0.73
HMGCS2P54868 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HMGCS2P54868 AC027307.2-201ENST00000591252 911 ntBASIC19.61■□□□□ 0.73
HMGCS2P54868 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC19.61■□□□□ 0.73
HMGCS2P54868 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
HMGCS2P54868 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HMGCS2P54868 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
HMGCS2P54868 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
HMGCS2P54868 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
HMGCS2P54868 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
HMGCS2P54868 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HMGCS2P54868 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC19.61■□□□□ 0.73
HMGCS2P54868 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HMGCS2P54868 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC19.61■□□□□ 0.73
HMGCS2P54868 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
HMGCS2P54868 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC19.6■□□□□ 0.73
HMGCS2P54868 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC19.6■□□□□ 0.73
HMGCS2P54868 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC19.6■□□□□ 0.73
HMGCS2P54868 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC19.6■□□□□ 0.73
HMGCS2P54868 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HMGCS2P54868 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
HMGCS2P54868 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC19.6■□□□□ 0.73
HMGCS2P54868 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
HMGCS2P54868 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC19.6■□□□□ 0.73
HMGCS2P54868 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HMGCS2P54868 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
HMGCS2P54868 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC19.6■□□□□ 0.73
HMGCS2P54868 TERF1P3-201ENST00000505638 1227 ntBASIC19.6■□□□□ 0.73
HMGCS2P54868 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC19.6■□□□□ 0.73
HMGCS2P54868 AC087641.1-201ENST00000557561 1021 ntBASIC19.6■□□□□ 0.73
HMGCS2P54868 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC19.6■□□□□ 0.73
HMGCS2P54868 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC19.6■□□□□ 0.73
HMGCS2P54868 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC19.6■□□□□ 0.73
HMGCS2P54868 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
HMGCS2P54868 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HMGCS2P54868 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
HMGCS2P54868 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
HMGCS2P54868 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
HMGCS2P54868 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
HMGCS2P54868 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
HMGCS2P54868 AC016027.1-202ENST00000607927 1699 ntBASIC19.59■□□□□ 0.73
HMGCS2P54868 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
HMGCS2P54868 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
HMGCS2P54868 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
HMGCS2P54868 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC19.59■□□□□ 0.73
HMGCS2P54868 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
HMGCS2P54868 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
HMGCS2P54868 CD81-202ENST00000381036 880 ntTSL 3 BASIC19.59■□□□□ 0.73
HMGCS2P54868 RAC2-204ENST00000406508 893 ntTSL 5 BASIC19.59■□□□□ 0.73
HMGCS2P54868 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC19.59■□□□□ 0.73
HMGCS2P54868 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC19.59■□□□□ 0.73
HMGCS2P54868 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC19.59■□□□□ 0.73
HMGCS2P54868 YTHDF3-AS1-201ENST00000603538 718 ntBASIC19.59■□□□□ 0.73
HMGCS2P54868 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
HMGCS2P54868 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC19.59■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms