Protein–RNA interactions for Protein: O95985

TOP3B, DNA topoisomerase 3-beta-1, humanhuman

Known RBP Predictions only

Length 862 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3BO95985 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TOP3BO95985 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TOP3BO95985 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC17.56■□□□□ 0.4
TOP3BO95985 AC018695.7-201ENST00000624587 2492 ntBASIC17.56■□□□□ 0.4
TOP3BO95985 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TOP3BO95985 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TOP3BO95985 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TOP3BO95985 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC17.56■□□□□ 0.4
TOP3BO95985 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TOP3BO95985 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
TOP3BO95985 DDX43P3-201ENST00000441064 443 ntBASIC17.56■□□□□ 0.4
TOP3BO95985 LHX6-205ENST00000464484 666 ntTSL 2 BASIC17.56■□□□□ 0.4
TOP3BO95985 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC17.56■□□□□ 0.4
TOP3BO95985 AC009533.2-201ENST00000543664 586 ntBASIC17.56■□□□□ 0.4
TOP3BO95985 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC17.56■□□□□ 0.4
TOP3BO95985 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC17.56■□□□□ 0.4
TOP3BO95985 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC17.56■□□□□ 0.4
TOP3BO95985 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC17.56■□□□□ 0.4
TOP3BO95985 AC116407.2-201ENST00000613639 860 ntBASIC17.56■□□□□ 0.4
TOP3BO95985 AL118508.1-201ENST00000613502 2345 ntBASIC17.56■□□□□ 0.4
TOP3BO95985 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC17.56■□□□□ 0.4
TOP3BO95985 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TOP3BO95985 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TOP3BO95985 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC17.56■□□□□ 0.4
TOP3BO95985 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC17.56■□□□□ 0.4
TOP3BO95985 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
TOP3BO95985 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
TOP3BO95985 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
TOP3BO95985 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TOP3BO95985 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
TOP3BO95985 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TOP3BO95985 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TOP3BO95985 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TOP3BO95985 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
TOP3BO95985 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TOP3BO95985 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
TOP3BO95985 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
TOP3BO95985 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TOP3BO95985 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TOP3BO95985 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TOP3BO95985 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC17.55■□□□□ 0.4
TOP3BO95985 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC17.55■□□□□ 0.4
TOP3BO95985 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC17.55■□□□□ 0.4
TOP3BO95985 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TOP3BO95985 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TOP3BO95985 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC17.55■□□□□ 0.4
TOP3BO95985 RNA5SP416-201ENST00000516838 111 ntBASIC17.55■□□□□ 0.4
TOP3BO95985 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TOP3BO95985 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC17.55■□□□□ 0.4
TOP3BO95985 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC17.55■□□□□ 0.4
TOP3BO95985 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TOP3BO95985 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC17.55■□□□□ 0.4
TOP3BO95985 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TOP3BO95985 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TOP3BO95985 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
TOP3BO95985 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC17.55■□□□□ 0.4
TOP3BO95985 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC17.55■□□□□ 0.4
TOP3BO95985 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
TOP3BO95985 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
TOP3BO95985 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC17.54■□□□□ 0.4
TOP3BO95985 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TOP3BO95985 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
TOP3BO95985 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TOP3BO95985 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TOP3BO95985 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
TOP3BO95985 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TOP3BO95985 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
TOP3BO95985 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
TOP3BO95985 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
TOP3BO95985 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TOP3BO95985 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
TOP3BO95985 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC17.54■□□□□ 0.4
TOP3BO95985 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC17.54■□□□□ 0.4
TOP3BO95985 WBP2-203ENST00000433525 928 ntTSL 2 BASIC17.54■□□□□ 0.4
TOP3BO95985 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TOP3BO95985 UNC93B6-202ENST00000528242 690 ntBASIC17.54■□□□□ 0.4
TOP3BO95985 OR7E14P-202ENST00000530490 1290 ntBASIC17.54■□□□□ 0.4
TOP3BO95985 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC17.54■□□□□ 0.4
TOP3BO95985 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC17.54■□□□□ 0.4
TOP3BO95985 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC17.54■□□□□ 0.4
TOP3BO95985 PNMT-203ENST00000581428 677 ntTSL 2 BASIC17.54■□□□□ 0.4
TOP3BO95985 AC005336.2-201ENST00000593183 939 ntBASIC17.54■□□□□ 0.4
TOP3BO95985 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC17.54■□□□□ 0.4
TOP3BO95985 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC17.54■□□□□ 0.4
TOP3BO95985 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC17.54■□□□□ 0.4
TOP3BO95985 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
TOP3BO95985 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TOP3BO95985 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TOP3BO95985 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
TOP3BO95985 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TOP3BO95985 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
TOP3BO95985 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC17.54■□□□□ 0.4
TOP3BO95985 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TOP3BO95985 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TOP3BO95985 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC17.54■□□□□ 0.4
TOP3BO95985 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC17.54■□□□□ 0.4
TOP3BO95985 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
TOP3BO95985 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC17.54■□□□□ 0.4
TOP3BO95985 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TOP3BO95985 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms