Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
MSH4O15457 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
MSH4O15457 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC19.13■□□□□ 0.65
MSH4O15457 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC19.13■□□□□ 0.65
MSH4O15457 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
MSH4O15457 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
MSH4O15457 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
MSH4O15457 PMP22-202ENST00000395936 816 ntTSL 3 BASIC19.13■□□□□ 0.65
MSH4O15457 DDT-204ENST00000404092 805 ntTSL 3 BASIC19.13■□□□□ 0.65
MSH4O15457 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC19.13■□□□□ 0.65
MSH4O15457 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC19.13■□□□□ 0.65
MSH4O15457 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC19.13■□□□□ 0.65
MSH4O15457 AL513480.1-201ENST00000451731 511 ntBASIC19.13■□□□□ 0.65
MSH4O15457 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC19.13■□□□□ 0.65
MSH4O15457 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC19.13■□□□□ 0.65
MSH4O15457 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
MSH4O15457 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC19.13■□□□□ 0.65
MSH4O15457 AC023141.13-201ENST00000604991 943 ntBASIC19.13■□□□□ 0.65
MSH4O15457 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC19.13■□□□□ 0.65
MSH4O15457 BSG-214ENST00000614867 960 ntTSL 3 BASIC19.13■□□□□ 0.65
MSH4O15457 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC19.13■□□□□ 0.65
MSH4O15457 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
MSH4O15457 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
MSH4O15457 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC19.13■□□□□ 0.65
MSH4O15457 KRT8P49-201ENST00000604166 1432 ntBASIC19.13■□□□□ 0.65
MSH4O15457 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC19.13■□□□□ 0.65
MSH4O15457 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
MSH4O15457 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
MSH4O15457 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
MSH4O15457 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC19.13■□□□□ 0.65
MSH4O15457 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
MSH4O15457 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
MSH4O15457 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
MSH4O15457 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
MSH4O15457 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
MSH4O15457 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC19.13■□□□□ 0.65
MSH4O15457 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
MSH4O15457 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
MSH4O15457 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
MSH4O15457 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
MSH4O15457 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
MSH4O15457 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
MSH4O15457 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
MSH4O15457 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC19.12■□□□□ 0.65
MSH4O15457 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
MSH4O15457 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
MSH4O15457 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
MSH4O15457 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC19.12■□□□□ 0.65
MSH4O15457 SLC22A20-204ENST00000530038 1673 ntBASIC19.12■□□□□ 0.65
MSH4O15457 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC19.12■□□□□ 0.65
MSH4O15457 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
MSH4O15457 AL021920.2-201ENST00000624828 1351 ntBASIC19.12■□□□□ 0.65
MSH4O15457 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
MSH4O15457 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
MSH4O15457 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
MSH4O15457 YBX2P1-201ENST00000394192 760 ntBASIC19.12■□□□□ 0.65
MSH4O15457 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
MSH4O15457 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
MSH4O15457 AC004832.2-201ENST00000426397 482 ntBASIC19.12■□□□□ 0.65
MSH4O15457 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC19.12■□□□□ 0.65
MSH4O15457 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC19.12■□□□□ 0.65
MSH4O15457 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC19.12■□□□□ 0.65
MSH4O15457 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC19.12■□□□□ 0.65
MSH4O15457 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC19.12■□□□□ 0.65
MSH4O15457 AC002347.1-201ENST00000569543 541 ntBASIC19.12■□□□□ 0.65
MSH4O15457 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC19.12■□□□□ 0.65
MSH4O15457 AC007064.4-201ENST00000637740 555 ntBASIC19.12■□□□□ 0.65
MSH4O15457 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC19.12■□□□□ 0.65
MSH4O15457 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
MSH4O15457 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC19.11■□□□□ 0.65
MSH4O15457 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
MSH4O15457 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
MSH4O15457 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
MSH4O15457 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
MSH4O15457 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
MSH4O15457 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
MSH4O15457 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
MSH4O15457 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
MSH4O15457 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
MSH4O15457 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
MSH4O15457 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
MSH4O15457 BX842568.4-201ENST00000421222 227 ntBASIC19.11■□□□□ 0.65
MSH4O15457 RPP21-221ENST00000428040 594 ntTSL 2 BASIC19.11■□□□□ 0.65
MSH4O15457 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC19.11■□□□□ 0.65
MSH4O15457 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
MSH4O15457 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC19.11■□□□□ 0.65
MSH4O15457 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC19.11■□□□□ 0.65
MSH4O15457 PDPK2P-202ENST00000562415 1191 ntBASIC19.11■□□□□ 0.65
MSH4O15457 AC005412.3-201ENST00000580309 715 ntBASIC19.11■□□□□ 0.65
MSH4O15457 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
MSH4O15457 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC19.11■□□□□ 0.65
MSH4O15457 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
MSH4O15457 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
MSH4O15457 HARS-203ENST00000431330 1774 ntTSL 2 BASIC19.11■□□□□ 0.65
MSH4O15457 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
MSH4O15457 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
MSH4O15457 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
MSH4O15457 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC19.11■□□□□ 0.65
MSH4O15457 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC19.11■□□□□ 0.65
MSH4O15457 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 65.1 ms